Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3035 |
Symbol | fliR |
ID | 4174807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3666882 |
End bp | 3667661 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056061 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_662595 |
Protein GI | 109899340 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTTTT CCGCCGACAT TATCACTCAG TTCATGGGTG ACATGTTACT GCCATTCATG CGTATATCGG GCATGTTGGC GACCATGGTT GGCTTGAGTG CGAAAACAGT TCCCACTACT GTACGCGCTT TATTGACGCT GTTTATTACT TTCATTATTT TGCCTGTTAT ACCGCCTGTG CCGGTTGTAG AAATACTCTC AGTAAGTACC TTCGTGTTGG TGATCCAGCA ACTTATTATC GGTATTTCCC TGGGGTTTAT CTCAACCATG GTGCTGAATA CCTTTGTATT GGCAGGGCAA GTCGTGGCGA TGCAAACAGG GCTTGGATTT GCTTCCATCG TCGACCCAGT CAATGGCATC AATGTACCCG CGGTAGGTCA GTTCTACTTA ATTCTAGCGA CTTTGCTCTT TTGGGCGCTA GATGGCCATT TAGCCATGAT CCGTATGGTG GTGATGAGCT TTACTGCATT TCCAGTAGGA GAAGCGTGGC TTCAGCCAGA GCAATTTAGA GAAATCGCCC ATTGGGCTGG TTGGATGTTT ATTTCCGCCG TGACCTTGTC TTTAGCGCCG ATTGTATCTT TATTGATTGT TAACTTGGCG TTCGGTGTTA TGACCAAGGC GGCGCCGCAA TTGAACATTT TTAGTTTGGG TTTCAGTATC GCGCAAATCA TGGGTTTGGT GATTATCTGG ATCACCATGG ATAATTTCAC TTACCACTTT GAAGTACAGT GGGATAGAGC TCAGCAAATG ATGTGTCAGC TCGTTAGAGT TTGTCCTTAA
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Protein sequence | MAFSADIITQ FMGDMLLPFM RISGMLATMV GLSAKTVPTT VRALLTLFIT FIILPVIPPV PVVEILSVST FVLVIQQLII GISLGFISTM VLNTFVLAGQ VVAMQTGLGF ASIVDPVNGI NVPAVGQFYL ILATLLFWAL DGHLAMIRMV VMSFTAFPVG EAWLQPEQFR EIAHWAGWMF ISAVTLSLAP IVSLLIVNLA FGVMTKAAPQ LNIFSLGFSI AQIMGLVIIW ITMDNFTYHF EVQWDRAQQM MCQLVRVCP
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