Gene Patl_3027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3027 
Symbol 
ID4174799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3657084 
End bp3659348 
Gene Length2265 bp 
Protein Length754 aa 
Translation table11 
GC content46% 
IMG OID638056053 
ProductCheA signal transduction histidine kinases 
Protein accessionYP_662587 
Protein GI109899332 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGTTTG ATGTTGACGA GGAGATCCTT CAGGATTTTT TAGTAGAAGC GGGTGAAATA 
CTAGAGCAGC TTCAAGAACA GCTGGTTGAG TTGGAAAATA ATCCGCAAGA TTCGGATTTA
CTGAATGCGA TTTTCAGAGG CTACCACACG GTTAAAGGTG GCGCGGGCTT TCTTTCGTTA
ACCGAATTAG TCGATATTTG TCACGGCGCT GAAAACGTAT TCGATGTCAT GCGTAACGGC
CAACGTTCAT TAACGCCAGA GTTAATGGAT ATTATTCTTC AAGCAACCGA CGAAGTCGTC
GCCATGTTTG AAGATGTAAA ATCGAACAAA CCCTTGGTAG CAGCAGAGCA ATCGTTATTA
GATACATTGC ATCGCCTGAG TAAGCCAGAG GCGCAAGACC AAGTTGCTGC GCCTCCAATT
ATCGAAACGC CAGTAATCGA GGCGCCCAGT GAAGCGGCAT CTCAGCCTAA AACAAATTCG
GATGACTTTG ACGAATCCGA GTTTGAGGCC TTGCTTGATG AACTTCACGG TGAAGGTAAT
CCCGTTGGAG GAGCATCGCA ATCACCATCA ATTAAGCCGC CACAATCCAC AGAGTCTTCC
AGTGGCGCTG ATATGAGTAG TGATGGTGAC GATATTAGTG ATGATGAGTT TGAAGCGTTA
CTCGATCAGC TTCATGGAGA AGGGCAGTTT GGCGGCTCTC AAGACGCTCC CTCTGAATCG
ACTGACGCGC CCGTAGCAAG CACAAATTCT GAATCAGAAG ATATCAGTGA TGATGAATTC
GAAGCGTTAC TCGATCAGCT CCATGGTAAA GGGCAAGGGC CTGTTACCAA AAAAGAAGCT
AACGGAGAAA CAAGTAAAGC GCCAAACACT CCAGTAACGT CGGCAGTATC TGATAACACG
CCGTCGCAAT CCGCAAGTGA AAAAGCCACT GATAAAAGTA ACGACACTAA GTCGAGTGCG
CCCAGCATTG CCTCTAGCCA AGCCAATATA CCTGCTAAAA GCCCTGGGGC GGCGGAAAAG
TCGGCTGTTT CTAAGCGTGA GGAAAAGCGT CCCGCAGCAC CACAGCCGGA AACGACGGTT
AGGGTGGATA CCAAGCGCTT AGACCAAATC ATGAATATGG TAGGTGAGTT GGTATTAGTG
CGTAACAGGT TGCTTAGTTT AGGTTTATCC GTCAACGACG AAAGTATGTC AAAAGCGATT
GCTAATTTAG ACGTGGTCAC CGGCGATTTG CAAGGCGCCG TGATGAAAAC GCGCATGCAG
CCCATCAAAA AAGTGTTTGG GCGTTTTCCT CGAGTCGTGC GTGACTTAGC GCGCACCTTG
AAGAAAGAAA TTACCCTTGA ACTAGAGGGT GAAGAAACAG ATTTAGACAA AAATTTAGTC
GAGGCCCTTG CTGATCCTTT GGTGCATCTA GTACGAAATT CAGTGGATCA TGGTATAGAA
ATGCCAGCGG ATCGGGTCGC AGCGGGCAAG CCATCTTTAG GTACGGTAAA GCTATCAGCT
TCTCAAGAAG GTGATCATAT TTTGCTGAGC ATAGTCGATG ACGGTAAAGG CATGGACCCT
GATAAGCTTA AAGAAATAGC TATTTCTCGA GGCGTATTAG ATGCTGATGC CGCGGCTCGA
ATGACAGATG AAGAAGCATT CAATTTAATT TTCGCTCCGG GTTTCTCGAC CAAAACTGAA
ATATCCGAAG TGTCAGGCCG CGGCGTTGGT ATGGACGTGG TGAAAACCAA AATTAACCAG
CTAAATGGTA CGGTCAATAT CGATTCTGTG CTGGGCAAAG GCACCACGCT AGAAATTAAA
GTGCCACTGA CTTTGGCAAT ATTACCGACT CTTATGATAG TGGTTGGCGA TCAAACCTTC
GCATTACCAT TAGGCTCGGT AAACGAAATT ATCAACATGG ATATGAGTAA AACCAATACA
GTTGATGGCC AATTAACAAA AATCGTTCGT TCCAAAGCGA TCCCATTATT CTATTTACGC
GAGTGGTTAG TACGCAAAAA TGCTAAGCCA ATCCCGCTAG ATCGCGCTAA GGGACATGTT
GTTGTCGTGC AAATTGGTAC CCAGCAACTC GGTTTTGTGG TTGATGCGCT CATCGGTCAA
GAAGAAGTGG TGATTAAGCC ATTAGATGAA TTGCTACAAG GTACTCCTGG CATGGCTGGC
GCAACGATTA CCAGTGATGG TGGGATTGCG TTGATCCTAG ATGTTCCAGG CCTACTAAAG
CATTATGCTA AGAAAAAAGC CGATGCCATT CGACAAGCGC GTTAA
 
Protein sequence
MGFDVDEEIL QDFLVEAGEI LEQLQEQLVE LENNPQDSDL LNAIFRGYHT VKGGAGFLSL 
TELVDICHGA ENVFDVMRNG QRSLTPELMD IILQATDEVV AMFEDVKSNK PLVAAEQSLL
DTLHRLSKPE AQDQVAAPPI IETPVIEAPS EAASQPKTNS DDFDESEFEA LLDELHGEGN
PVGGASQSPS IKPPQSTESS SGADMSSDGD DISDDEFEAL LDQLHGEGQF GGSQDAPSES
TDAPVASTNS ESEDISDDEF EALLDQLHGK GQGPVTKKEA NGETSKAPNT PVTSAVSDNT
PSQSASEKAT DKSNDTKSSA PSIASSQANI PAKSPGAAEK SAVSKREEKR PAAPQPETTV
RVDTKRLDQI MNMVGELVLV RNRLLSLGLS VNDESMSKAI ANLDVVTGDL QGAVMKTRMQ
PIKKVFGRFP RVVRDLARTL KKEITLELEG EETDLDKNLV EALADPLVHL VRNSVDHGIE
MPADRVAAGK PSLGTVKLSA SQEGDHILLS IVDDGKGMDP DKLKEIAISR GVLDADAAAR
MTDEEAFNLI FAPGFSTKTE ISEVSGRGVG MDVVKTKINQ LNGTVNIDSV LGKGTTLEIK
VPLTLAILPT LMIVVGDQTF ALPLGSVNEI INMDMSKTNT VDGQLTKIVR SKAIPLFYLR
EWLVRKNAKP IPLDRAKGHV VVVQIGTQQL GFVVDALIGQ EEVVIKPLDE LLQGTPGMAG
ATITSDGGIA LILDVPGLLK HYAKKKADAI RQAR