Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2998 |
Symbol | |
ID | 4174768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3624746 |
End bp | 3626302 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638056023 |
Product | transcriptional regulator, TyrR |
Protein accession | YP_662560 |
Protein GI | 109899305 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.014514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGTCTGG AAATAAGCTG TCAGGACCGT CTGGGGATCA CGCAAGATGT CCTCGATATT TTGGTCAGTC ATGAGGTCGA CTTACGCGGT ATTGAAATCA ATGAAATGGG TAAAATTTAC CTAAGTTTCC CAAATATGGA TTTCGAGCAC TTCCAACATC TGATGCCAAA AATTAGAAAG ATAGCAGGTA TCGATGATGT GAAAACTATT CCTTTTATGC CCCTCGAACG GGAGCAAAAT CAGTTACGCG CACTTCTACA AACCTTACCA GACCCTGTAT TTTCCGTTGA TACCAAAGGG CGGATTTTGC TTATTAATGA TGCGGTTACA GCGAGTTTAG AAACCGAGCG TGAAGCACTG ATCGGTGTTG ATATCGATGA GTTAGTGAAA GGGTTCAATA CACTGCGCTG GTTAGAAAGT AAGAAGATTG CCAGCCTTAC GCAGAAGGTA CGCTTCATTG AGCAAAATTA CTTAGCCGAT ATCTTACCCG TTATGGTGCC TGATTCTGGA GGCGACCCTA TTTTAGCTGG AGCAGTATTT ATGCTTAAGT CAGAACAGCG CCTAGGACAG CAATTAACCG TATTTCACGA GGCGTCACTT GACAGTTTTA TGTCGATTCA AGCCTCGAGC AAGGTGATGA AAAAAGTGGT TCGTGAGGCT AAGCGGATGG CTGAGCTTGA TGGCCCAATT ATATTGTACG GCGAAACAGG CACAGGCAAA GAGTTAATCG CCCATGCCTG TCACGAAGCA AGTCGAAGAA AAGACGCCAG TTTTTTAGTG TTAAATTGTG CTTCGCTGCC TGACAACGTA GCTGAAACTG AGCTATTTGG ATATGCCGCC GGCGCCTTTG GGCAAAGTAC AGGGAAAGAA GGGTTACTTG AACTTGCACA GGGTGGAAGT TTATTCCTTG ATGAAGTCGG GGATATGTCG CCTCAACTAC AAGCGAAGTT ACTACGCGTG CTTCAAGATG GAAAGTTTAG GCGCGTTGGA GATACTAAAG AAGTAAAAGT AGATGTCAGG TTTATTTGCA CAACGCAAAA AGACCTCGCT CAGTTAGTCC AAGAGGGACG TTTTCGAGAG GACTTATATT ACCGTTTAAA TGTGCTCAGT TTGGGAATTC CGCCATTGCG TGAACGTAAA ATGGACATCA TTCCTTTAGC GGAAACCTTT TTGAAGCAGC ACAGCCTGAC GCTGGGTCGT AAAGTCCCTA AATTAACCAA ATCCTGTGTC GATTATATTC AAGCCTATCC TTGGTTTGGC AATGTGCGTC AATTAGAGAA TGTGCTCTAT CGGGCGGTCT CTTTGCTGGA AGGCAATGAG CTTGGAAAGG AGCATATTCA AATCCCTTCG AGTGCCAATG CCATGAGTTT TGTGACCGAA GACTTCGATG GTAGTTTAGA CGAAGAAGTA AAACGCTTTG AAAAAAGTAT TTTACAGCGG CTTTACCCGA GTTACCCCAG CTCAAGGCTT TTAGCAAAAA AACTGGGTCT TAGTCATACC GCTATTGCGA ATAAGCTTCG TGATTATGGA ATAAATAAAA AGTCCGTAAA GATATAA
|
Protein sequence | MRLEISCQDR LGITQDVLDI LVSHEVDLRG IEINEMGKIY LSFPNMDFEH FQHLMPKIRK IAGIDDVKTI PFMPLEREQN QLRALLQTLP DPVFSVDTKG RILLINDAVT ASLETEREAL IGVDIDELVK GFNTLRWLES KKIASLTQKV RFIEQNYLAD ILPVMVPDSG GDPILAGAVF MLKSEQRLGQ QLTVFHEASL DSFMSIQASS KVMKKVVREA KRMAELDGPI ILYGETGTGK ELIAHACHEA SRRKDASFLV LNCASLPDNV AETELFGYAA GAFGQSTGKE GLLELAQGGS LFLDEVGDMS PQLQAKLLRV LQDGKFRRVG DTKEVKVDVR FICTTQKDLA QLVQEGRFRE DLYYRLNVLS LGIPPLRERK MDIIPLAETF LKQHSLTLGR KVPKLTKSCV DYIQAYPWFG NVRQLENVLY RAVSLLEGNE LGKEHIQIPS SANAMSFVTE DFDGSLDEEV KRFEKSILQR LYPSYPSSRL LAKKLGLSHT AIANKLRDYG INKKSVKI
|
| |