Gene Patl_2997 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2997 
Symbol 
ID4174767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3623460 
End bp3624542 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content43% 
IMG OID638056022 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_662559 
Protein GI109899304 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.171273 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGTCCAG ATACGCACTA CAATCCATTA AATACCGATG GTTTCGAATT CGTCGAATAT 
ACCGCAGCCG ATGAAAAAGG AATAAAGGAT TTAGCTGATT TGTTTAGCTC TTTAGGGTTT 
GCTGAGGTAG CAAAACACAG ATCAAAGCGT GTTTGGTTGT ATAAGCAGGG AGACATTAAC 
TTCATTATTA ACGCTGAACA TGCTTCGCAA GCACAGGAGT TCGCTAGGTT GCGCGGTCCT 
AGTGTGTGCG GTATGGCATT TAGAGTAAAA GACGGCAAGG TAGCGTTCGA ACACGCGCTT 
GAGAACGGCG CAAAAGCATT TGTTGGGAAC TTAGGAGCTA TGGAGCTGAA TATTCCTGCG 
GTCTATGGCA TAGGCGAGAG TACACTTTAC TTTGTTGATC GCTATGGTGA TGATTCTATT 
TATGAGGTGG ATTTTCGCTT TTACCCCAAC TGGCGTGAGA AGATGAAAGA GTGTGACGCT 
GGTCTTTTGA CTCTGGATCA CCTAACGCAC AATGTGAAAC GCGGCAACAT GGTAGTGTGG 
GCAAACTTCT ATGAACGGTT AGGTAATTTT AGAGAAGTTC GTCATTTTGA TATCGAAGGG 
AAATTAACCG GTCTGGTGAG CAGGGCTATG ACATCGCCTT GCGGAAAAAT TCGTATTCCA 
ATAAACGAAT CTTCTGACGA TAAATCCCAA ATTGAAGAGT TTATTCGTGA GTACAATGGA 
GAGGGTATTC AGCATATCGC GCTCTGTACT AATGATATTT ATCAGACGGT TAAAACCTTA 
CGCAATGTAG GTGTAAACTT TATGGATACT CCCGACACCT ATTATGAAGG CGTTGACGCT 
CGCGTTGCTG GAAACGGTGA GAACTTGGCT GACTTACAAA GCTTAAAACT CTTAATTGAT 
GGCGCACCAA TGAGAGACGG CATTTTGCTA CAGATTTTCA CTGATACGGT TATCGGACCT 
GTTTTTTTTG AGATAATTCA GAGAAAAGGG AACGAGGGGT TCGGGGAAGG GAACTTCAAA 
GCGCTATTTG AATCGATTGA GCAAGACCAG ATACGTCGCG GTGTTATCGA TCAAGATCGT 
TAA
 
Protein sequence
MCPDTHYNPL NTDGFEFVEY TAADEKGIKD LADLFSSLGF AEVAKHRSKR VWLYKQGDIN 
FIINAEHASQ AQEFARLRGP SVCGMAFRVK DGKVAFEHAL ENGAKAFVGN LGAMELNIPA 
VYGIGESTLY FVDRYGDDSI YEVDFRFYPN WREKMKECDA GLLTLDHLTH NVKRGNMVVW 
ANFYERLGNF REVRHFDIEG KLTGLVSRAM TSPCGKIRIP INESSDDKSQ IEEFIREYNG 
EGIQHIALCT NDIYQTVKTL RNVGVNFMDT PDTYYEGVDA RVAGNGENLA DLQSLKLLID 
GAPMRDGILL QIFTDTVIGP VFFEIIQRKG NEGFGEGNFK ALFESIEQDQ IRRGVIDQDR