| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2992 |
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| Symbol | |
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| ID | 4174762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3615946 |
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| End bp | 3617592 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638056017 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_662554 |
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| Protein GI | 109899299 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0107405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAAAATG TAGGATTGGA AAAAATAGTT GGCTTATTTG AATTGCTTAA GTTCGACGAG
GCGGAAGAAA GTTGTTTAGC CTTGTTAGAG CAGAGTAATG TTGAAAAAGA ATCGTTATAT
ATCATCCTCC TAGAGATATC AAAAAGGCGA AAAGATGACG CACTTACTTT TCGATACCTT
GAGATTCTTA TTGAACTCAA TAATAAGAAA ACGTGTTTCT ATTACGAGAA GGCGGAACTT
TGTTACAAGA GGGGAATGAT AAAGGAAGGC ATATCCTGCT ACGAGAAGTT AATTGCTAGA
AGGCCTGACT ATGCAAATGC AAGATATAAC TTCGCTATAT ATTTAAAGAG ATGCGGTGAG
CCTAATCGAG CATTAGAAAG TTATCGTGTG GCGCTATCGT TAAATATCGA TAATCCAAGC
GAAGTTTATT TAAATATGGG AGTGATATAC GCAGGAATTA ACGATGCTGA TAATGCGATT
GAACATTATT TCAAAGCTCT GAAAGCTAAC AAAAGTTATC TACCCGCTAT GTATAATTTG
GGGGGGATAT ACGAAGAGCT AGGAGAAAAA AATCAAGCTG CTGAACAGTA TTTGAAAATT
TGTAGCCTTG AACCTGACAA TATTAAAGCA CTTACAAGAT TATTATATCT AAAAGGTGAT
CAAGCGTTAG GTAGCGAAGA GCTTCAGAGG CTCGAATCTG TCCTAAGAAG GTCAAGTACA
AATATTTCAA ATATTGAATT AGAAGCTTCT TATTTTGCTT TAGGTCATAG CCATGATGTA
GGTAGAGATT ACCCTAAAGC TTTCTATTAT TTTACGCTTG CAAATGATCT AGGAAGCAGG
CGTGTAGATA AATATTTACC AATTCGGACT GAAAACGAAA CAATAAAAAT TCTTTCACAT
TTCACTGAGC TTTGGCGCGA AAAAAATCAA CTTGATAATG ATTTCGCTCC AATATTTGTA
TGTGGCATGT TTAGAAGCGG TTCAACTTTA ATTGAAAGCT TATTATCAGA ACATCCCCAT
GTAGTACCGG GCGGAGAGCT TAACTTTTTA CACCAATCAA TTCGAAATTT GGAAGCTGAC
ATTACAAATT TAGGCAAACC AGAGCTCAAA ATAATTTCAG AAAATTATCG AAATCTTGTC
TCAAAGGCAA ACATACAGAA TGGATTAGTA GTGGATAAAC GTCCAGATAA CTTTAAATAT
ATTGGCTTAA TTAAAGCTAT TTTTCCAAAC GCTAAAATCA TCTGTACTGA TAGGAATACC
ATAGATACTT GCTTATCTGT GTACTTTCAA CAATTGGATT CATCATTGGG ATACGCTGTT
AAACTTGAGT ACATTGCACA CTATTATCAA GAATATAAAA AGCTTTTACG CCATTGGCAG
AATCTTTTCC CAAATGATAT TTACGTAGCT GACTATGAGC GTCTCGTCGA CTTTCCTATG
GAGGTGTGTA ATGAAGTGTT CGAACACTGC AATTTGGTTT GGGATGACGA TTACTTAGAC
TTTTATAACA GTAATAGATT AGTTAAGACC GCTAGCATAT GGCAAGTTAG GAAACCTCTA
AAAAGGGGCG TTTCGAGAAG TCAAAACTAC AAATCTGAAA TACATCATAT TAAAGCTTTC
GAGGGTTTTA ATTCTACAGG CCAATAG
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| Protein sequence | MQNVGLEKIV GLFELLKFDE AEESCLALLE QSNVEKESLY IILLEISKRR KDDALTFRYL
EILIELNNKK TCFYYEKAEL CYKRGMIKEG ISCYEKLIAR RPDYANARYN FAIYLKRCGE
PNRALESYRV ALSLNIDNPS EVYLNMGVIY AGINDADNAI EHYFKALKAN KSYLPAMYNL
GGIYEELGEK NQAAEQYLKI CSLEPDNIKA LTRLLYLKGD QALGSEELQR LESVLRRSST
NISNIELEAS YFALGHSHDV GRDYPKAFYY FTLANDLGSR RVDKYLPIRT ENETIKILSH
FTELWREKNQ LDNDFAPIFV CGMFRSGSTL IESLLSEHPH VVPGGELNFL HQSIRNLEAD
ITNLGKPELK IISENYRNLV SKANIQNGLV VDKRPDNFKY IGLIKAIFPN AKIICTDRNT
IDTCLSVYFQ QLDSSLGYAV KLEYIAHYYQ EYKKLLRHWQ NLFPNDIYVA DYERLVDFPM
EVCNEVFEHC NLVWDDDYLD FYNSNRLVKT ASIWQVRKPL KRGVSRSQNY KSEIHHIKAF
EGFNSTGQ
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