Gene Patl_2971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2971 
Symbol 
ID4174741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp3597932 
End bp3598564 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content46% 
IMG OID638055996 
Productendonuclease III 
Protein accessionYP_662533 
Protein GI109899278 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCAAC AGAAACGTGT AGAGATGTTA ACGAGGTGGC GTGATGCTAA CCCGCACCCT 
ACAACTGAAT TGAACTTCAC AAGTCCCTTC GAGCTACTGA TTGCCGTTTT GCTCTCAGCT 
CAGGCGACCG ACGTGAGCGT TAATAAAGCC ATGGCCAAGA TGTTCCCTGT AGCCAATACA 
CCTGAAGCTG TTTACGCCCT GGGCGTGGAT GGCGTAAAAG AGTTCATTAA AACCATTGGG 
CTGTTTAATA CCAAAGCCGT GAATGTGATC AAAACCTGCA AGATGCTTAT CGAGCAACAT 
AACAGCGTGG TTCCAGAGGA TCGCGCAGCC CTAGAGGCAT TACCTGGCGT TGGTCGCAAA 
ACAGCAAATG TGGTGCTTAA TACGGCCTTT GGCTGGCCGA CAATCGCAGT AGATACGCAT 
ATATATCGTG TTTCTAACCG CACTAAGTTA GCAATGGGTA AAACTGTTGA TGACGTTGAA 
CAGAAACTGC TTAAGGTTGT TCCTACAGAA TTTAAAGTCG ACGTGCACCA CTGGCTAATA 
CTCCACGGAC GTTACACCTG CATCGCTCGT AAACCACGTT GCGGTTCTTG CATTATCGAA 
GATTTGTGTG AATTTAAAGA TAAAGTAGAT TAG
 
Protein sequence
MNQQKRVEML TRWRDANPHP TTELNFTSPF ELLIAVLLSA QATDVSVNKA MAKMFPVANT 
PEAVYALGVD GVKEFIKTIG LFNTKAVNVI KTCKMLIEQH NSVVPEDRAA LEALPGVGRK 
TANVVLNTAF GWPTIAVDTH IYRVSNRTKL AMGKTVDDVE QKLLKVVPTE FKVDVHHWLI 
LHGRYTCIAR KPRCGSCIIE DLCEFKDKVD