Gene Patl_2968 details

Gene Information

• Locus tag: Patl_2968
• Symbol: rnfD
• ID: 4174738
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 3595475
• End bp: 3596548
• Gene Length: 1074 bp
• Protein Length: 357 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638055993
• Product: electron transport complex protein RnfD
• Protein accession: YP_662530
• Protein GI: 109899275
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTATA AACTAGCCAG TTCACCTCAT CAGCATGTGC GACGCAACAC CGGTCAGGTT 
ATGCGCATGG TGATTTATGC ATTAATACCA GGCATTTTAC TGCAAACTTG GTTTTTCGGT 
TTCGGGGTGT TGGTGCAAAT AGCACTCGCG GTAATAACGG CGGTTGTCAC TGAAGCGACA 
ATATTAGAAA TGCGTAAGCG CAACTTCGAG CGCGCGATTA AAGATTACAG CGCGATATTA 
ACCGCTATTC TGTTGGCTAT CAGCATTCCA CCTTTTGCTC CTTGGTGGGT GATTGTCATC 
GGCACGTTCT TCGCAATTGC CATGGTTAAG CAATTATACG GCGGGCTGGG TTTCAATGTC 
TTTAATCCGG CAATGGCGGC GTACGTCATG TTGTTGGTGT CATTTCCGGT ACAAATGACC 
CAGTGGCTAC CTGCGCAAAG TCTCACCGCG CATCAACCCG GCCTTATCGA CGCTATCTAT 
GCAGTCTTTA CTGGCTTTAG TGCCGATGGT TTTAGCCTAG CTCAGCTGCA AGGCGCTGCA 
GATGGTCATA CCATGGCAAC GCCTCTTGAT GCCATTAAAA CAGGACTTGC CCAGGGCTTA 
ACCTATGAAG AAGGACTCCA GTCGGCCATA TTTGACGGCA GTTTAGGCAT TGGGTGGTGG 
TGGGTTAGCA CTGGATACCT GCTTGGTGGC TTATATCTGA TACGCGCTAA GATCATCAAT 
TGGCATATTC CAGGGGGCAT GCTTGCAGGC GCGGCTCTAT GTGCCGGTGT AATGTTTCTA 
GTGGATGCAG ACCGATTTGC GTCTCCGTTA TTCCATATTT TTAACGGTAG TTTGATCCTC 
GGTGCATTTT TTATCGCGAC AGATCCTGTA TCCGCGTCAA CCACCAATAA AGGGCGTATT 
ATTTTTGGCG CTGCCATTGG GTTTTGGGTG TATGTGATCC GCACATGGGG CGGTTATCCT 
GACGCAATTG CCTTTTCTGT TTTAATCATG AATATGGCAG TACCGCTCAT TGATTACTAC 
ACCCGCCCAC GCACTTATGG CCATACAAAA CGCACTAAGG GAGAGCCAAA ATGA 

 

Protein sequence

MNYKLASSPH QHVRRNTGQV MRMVIYALIP GILLQTWFFG FGVLVQIALA VITAVVTEAT 
ILEMRKRNFE RAIKDYSAIL TAILLAISIP PFAPWWVIVI GTFFAIAMVK QLYGGLGFNV 
FNPAMAAYVM LLVSFPVQMT QWLPAQSLTA HQPGLIDAIY AVFTGFSADG FSLAQLQGAA 
DGHTMATPLD AIKTGLAQGL TYEEGLQSAI FDGSLGIGWW WVSTGYLLGG LYLIRAKIIN 
WHIPGGMLAG AALCAGVMFL VDADRFASPL FHIFNGSLIL GAFFIATDPV SASTTNKGRI 
IFGAAIGFWV YVIRTWGGYP DAIAFSVLIM NMAVPLIDYY TRPRTYGHTK RTKGEPK