Gene Patl_2942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2942 
Symbol 
ID4174710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3564605 
End bp3565315 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content45% 
IMG OID638055965 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_662504 
Protein GI109899249 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID[TIGR02796] TolQ protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000153109 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGGCTG AGTTATCAAT ATTTGGATTA TTTTGGCAAG CTAGCTTATT AGTTCAGCTT 
GTGATGTTGT TGTTATTAGC CGCGTCTGTG GCATCTTGGA CGTTTATTTT TCAGCGTTCG
CAGGCGTTGA GCCGTGCAAA AAATGATATG AAAAAATTTG AGGATAAATT TTGGTCAGGG
GTCGATTTAA ATCGTCTTTA TCAAGAATTA GCTGCTCGAG AATCAGTGCA AGGTATGGCC
AGTTTATTCT GTGCTGGCTT TAAAGAATTT GTCCGCTTGC GTAAGTCGTC ATCTACCCCA
TCTGAGGCGA TAATGGACGG TACTTACCGT GCGATGCGTG TTTCCTTGTC AAGAGAAATT
GACGAATTAG AGAGCCGTTT ACCTTTCTTG GCGACTGTGG GCTCAATTAG CCCGTATATT
GGTTTATTTG GTACTGTGTG GGGGATCATG AATGCGTTTA TCGCTTTGGG TGAAGTCCAA
CAAGCCACGC TAGCCATGGT GGCGCCTGGT ATCGCTGAGG CGTTGATCGC AACCGCTATG
GGTCTGTTTG CCGCTATCCC TTCTGTTATC GCTTATAACC GTTTCAGCCA TCAAGTAGAA
AAGCTCGAAA ACAACTACGG TAACTTTATG GAAGAGTTTT CCAGCATATT GCATCGTCAG
TCGCTGGTAA CAAAGGCGGA TACCGTCACC AACGGTCCAG CTCAGGGCTA A
 
Protein sequence
MSAELSIFGL FWQASLLVQL VMLLLLAASV ASWTFIFQRS QALSRAKNDM KKFEDKFWSG 
VDLNRLYQEL AARESVQGMA SLFCAGFKEF VRLRKSSSTP SEAIMDGTYR AMRVSLSREI
DELESRLPFL ATVGSISPYI GLFGTVWGIM NAFIALGEVQ QATLAMVAPG IAEALIATAM
GLFAAIPSVI AYNRFSHQVE KLENNYGNFM EEFSSILHRQ SLVTKADTVT NGPAQG