| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2777 |
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| Symbol | |
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| ID | 4174537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3369555 |
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| End bp | 3371024 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055794 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_662342 |
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| Protein GI | 109899087 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000975793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAG AAAGGTTAGT AAAAGGGTTG GTTATCGCGG TTGTCGCACT GGTTGCTGTG
TGGTGGTTCA CTGAGCCTTC ACAGTCAGAT GAACGCATTG TCTATCATAC TCAACCACTG
TCTTTAGGGG ACATTGAAAG TACAGTTAAC TCATCTGGAA CGATTTCTCC TGTGGTCACC
GTCTTAGTTG GCTCGGAATT ATCAGGCCTA ATCTCTCAGT TAAATGCGGA TTTCAATGAC
GAGGTGAGCA GTGGGCAAGT GATCGCGCGC ATTGATGATC GCACTATTTT ATCAAGGCTA
CGCCAAAGCG AAGCTGACCT TGCGTCATCT AAAGCCTCTT TGACACAGTT AAAAGCGGCG
CTTAAAAAAG CCCAGACTGA GGCCACCTTG GCCCAGCGGG AGTTCAACCG AACCAAAGAG
CTTAAAGATA AAAATCTTGT TAGCGCATCA GAATTAGACA TCAGCGAAAC CAACAATGCG
CTAGCCAAAG TAGCTATCGA AACAGCACAG GCGGCTATCT TGGTAGGAGA AGCACAAGTT
GAACAATCGC AGTCAAATCT TGAACAAACA AAGCTTGATT TAGACCGTAC CTATATTCGC
TCACCCGTTG ATGGCGTGGT TATTGATCGT CAAGTAGACA CGGGCCAAAC AGTTTCTGCG
AGCTTATCGG CCCCCACTTT GTTTTCTATC GCGCAAGACT TAGTGAAAAT GCAAATTGAA
GCCGATGTGG ATGAAGCAGA CATAGGGCGC ATCGCAAAAG ACCAAAAGGT TAACTTTACC
GTAGATGCGT TCCCTGAACG CAAGTTTGCC GGGGTAGTCA GTCAGGTAAG AAAAGCGGCC
ACCGTGACCA ATAACGTGGT GACCTACAAA GTGATTATCA GTGTTGAAAA CGAGCAACTA
CTCTTGTTAC CCGGTATGAC CGCCAATGTA GACGTGATAT TGGGTGAGCG CAAAAATGTC
TTACGCGTGC CCAATTCAGC CCTGCGTTTT ACGCCAGAGG GAACAACGTC GAACACGGAT
TCAGGTAAAG GTGGGGCAGG TGATTCTGTC GCTCAGCTTG CGCAGCAACT TGGGTTAAAT
GATTCACAAC AGGCACAAGT AGCAACCGTC ATGGAAAACA TGCGCGATGC GATGCAAGCT
GCACGTAAAT CATCTCCTAG GGGCGGTCCA GGCGGTTCAC CAAATGACGC TATAAAGAAA
ATTCGTAGCA AGATGAATAT TGAGCTGCAA AGTATTTTAA CCCCAGACCA GATGGCGCAA
TTTAAGGCGC AAGGCCAGAC ACGAAATGCA CAGCGCAAAG CAGGCGACGG GGATTTACAG
CCAGGTACGG TGTGGGTATT ACGTGACGGT GAGCCTAGTA AAGTGAACGT GGGCATCGGG
ATCGCAGATT TAGAATACAG CGAGATCCGC GCTCGGGATT TACAAGCGGG TGATGAGGTG
ATTGTTCGCG CCCAAAAGGT AGCTGAGTGA
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| Protein sequence | MNKERLVKGL VIAVVALVAV WWFTEPSQSD ERIVYHTQPL SLGDIESTVN SSGTISPVVT
VLVGSELSGL ISQLNADFND EVSSGQVIAR IDDRTILSRL RQSEADLASS KASLTQLKAA
LKKAQTEATL AQREFNRTKE LKDKNLVSAS ELDISETNNA LAKVAIETAQ AAILVGEAQV
EQSQSNLEQT KLDLDRTYIR SPVDGVVIDR QVDTGQTVSA SLSAPTLFSI AQDLVKMQIE
ADVDEADIGR IAKDQKVNFT VDAFPERKFA GVVSQVRKAA TVTNNVVTYK VIISVENEQL
LLLPGMTANV DVILGERKNV LRVPNSALRF TPEGTTSNTD SGKGGAGDSV AQLAQQLGLN
DSQQAQVATV MENMRDAMQA ARKSSPRGGP GGSPNDAIKK IRSKMNIELQ SILTPDQMAQ
FKAQGQTRNA QRKAGDGDLQ PGTVWVLRDG EPSKVNVGIG IADLEYSEIR ARDLQAGDEV
IVRAQKVAE
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