Gene Patl_2732 details

Gene Information

• Locus tag: Patl_2732
• ID: 4174492
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 3326478
• End bp: 3327137
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638055749
• Product: isochorismatase hydrolase
• Protein accession: YP_662297
• Protein GI: 109899042
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.142839
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAACGA CCACTAAGAC CGCAAAAGAG ATTTATAACG ACGTAAAAAA TAACCCCGCG 
CGTAAACGTT TTGGCTTTGG TAATAAAGCG GTACTGGTCA ACATCGATCC GCAAAAGGCC 
TATACCTGCA CAGATGAGTT TGCCACCGCT TACGAGACCG ACCCACGGCA AATGGAATAC 
ATCAATGAGA TGTCAAAAAC CTTTCGCGCT AAAGGGTGGC CAGTGGTATG GACCCATGTC 
GCTTACATGG ATAGCGCCGA AGATGCCGGT ATTTGGGGCA CTCGCACGGA TACTCCGGAT 
TCACTGCAAA ACATCAAGTT TGATTCACGG CGCAGTGAAT TTGATGATCG CCTCGAAATC 
GATTACGTCA AAGATGTGGT TTATCTCAAA AAAATGCCCT CAGCCTTTTT TGAAACTCAG 
TTGCAGTCAT TGCTGGTATG GCACCAAGTG GACACGGTCA TTTTAACGGG CGGCTCTACC 
TCAGGATGCA TTCGCGCCAC AGCCGTTGAC TCTTTATCTC GTGGCTATCG CACCATAGTG 
CCTGAGGAGT GCGTAGCGGA TAAACATGAG AGTTACCACT ACGCGAATTT AACGGACTTG 
TCTCTTAAAT ACGCCGACGT ACTCACCTTA GACGAAGTGA ATCAGTGGCT TGCTAAGTAA 

 

Protein sequence

MQTTTKTAKE IYNDVKNNPA RKRFGFGNKA VLVNIDPQKA YTCTDEFATA YETDPRQMEY 
INEMSKTFRA KGWPVVWTHV AYMDSAEDAG IWGTRTDTPD SLQNIKFDSR RSEFDDRLEI 
DYVKDVVYLK KMPSAFFETQ LQSLLVWHQV DTVILTGGST SGCIRATAVD SLSRGYRTIV 
PEECVADKHE SYHYANLTDL SLKYADVLTL DEVNQWLAK