Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2728 |
Symbol | |
ID | 4174488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3321371 |
End bp | 3323257 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638055745 |
Product | hypothetical protein |
Protein accession | YP_662293 |
Protein GI | 109899038 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000615794 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCCGCA CTGCAATAAC AATGGCCTTA ACTGTCGCCG CAACTATGGC TTCTAGCTTC TCAGTATCTG CAAACAGTGC AACCTCTATT GAGAAAAGTG TTAAAAAGGT GTCTGAAAAA GACGTCGAAA AAATTAACAT CGAAGGCTCA GCTACAGCGA ATGAATCACC GGTTGGCACC TTCAACTCTC CCATCTCTAA TTTAGAATAC GACCCTAGAG TCGATCTGCA GTCTAGAAAC ATGGCTGAAG CACAAGCTGA TGTCACCATC CGCGGCGGTA TCTTCGAAAA CACCGGCTTT AGTGTGGGCA GCGCCACCCT TGTCGATCCG CAAACTGGCC ATTACGTGGC TGAAATTCCT ATTGCGCCAG AAATGCTCAC GGCACCGGCT ATTTTAACCG GTGTCGATAA TTCACTTTAC GGCGCAAATA GTTCAGTGGG CTCAGTGGCC TACAAATGGC GACCTATTCA AACTGCTGGT AGCGTTTCAT TAGGCGCTGG CAGAAATAAC TTTAATATGC AAAGGGTACA CAACGCCATT TCTTGGTCGG TGGATGATTC TTCACAGTGG AAAGCTGGCG GTGAAGGTGA ATATTCGCGC TCTGAAAGCG ATGGCACCAT AGACAAGGGG GATCACCGTT TCGAACGGGC ATCTGGGCGG GTGCAGCTCA TAAGCGACAC CTCGCAAACG GATCTCTTTT TCGGTTATCA ACAAAAGTTT TTTGGCTGGC CTAACCTGTA TACCCCTTTC AACGTGAATG AAACAGAAGA TTTAGAAACC CGTTTGTTGA TATTTAATCA CCAGCAGCAA TATGCTCAAG AAAGCACCGT TGAAGTGTCA GCTTATTACC GACAGCAAAA CGATCACTAT GTATTTTCAC GGGAAAACCC AGAGGCTTTT CAAGCTTTTC ACGAAACCAA GGTAAAGTCA GTGGCAGTAT CGGGTCGGCA TATGACAGAT TCAAAACTGG CGCTGAACTA TGCAGCGCAG TTCACAGCGG ATGAGATTGA ATCGACCACC CTTGAGAACA ACTTCACCTC GCGGGATTAC TACAAGTTCA GTGTGGTGCC TGAGTATGCA GTTGCCTTGC AAGACAACGA ACAATTAACG TTTCGTGTTG GGGCGGCATT TGATGACACC AATCGCGATG ATTCGCGGGT ATCCGTGATA AGCGATATCG TTTGGCTTAA AACAAACGCA GACAAGTCTA CACGGACGGT GAACTTTTCA TATTCTGAAG CCACACAAGT CGCAGGGTAT ACCGCCATTG GTGGAAGTAC CTCCAGTGGA TTGTTTAGAA GCAATGACAC ACTTGAGCGT GAAACCAGTA AAAACCTAGA GTTGGGCGTG TCGTTAGATA AAGCCTCGTG GCGCGTAGAT TCTGCTGTGT TCTACCGCTG GGACAACGAA CTCACTGATT GGACTTACCG CTTTGACTCT ACATCCGCAC GGGTGGCAAA CCCAGTTGAT ATCGAAACCA TAGGGGTTGA ACTGATGGCA ATTGCTCGTT TAGAAAGCGC AGATGTCGTG ACGAGCTATA CCTATCTTGA TAAATCTGAA GACTATCGAG ATGAAAATAT AGACGCAAGT TTCTACGCGC TAAACTATCC TCCCCATCGA TTCACCTTGG GTGTGATTTG GTATCCCGCT GAAGCGCTTG AGCTCAAAGT AGATAATGAA TGGCGAAAAC AAGAAGACAA CCTGTTGAGA AATGGCGGCG ATAGCGCTTT TTTCACCCAT ATCTCGTTGA CCTATTCACC GCCACAGATA GACGGCTTTA ACGTGGTGGT GGCGGTTGAT AACTTGTGGG ATGAATCTTT TGAAGAGATC CCCGGCACGC CAGGGCGCTC TGATCAATTA TCTGTTACAG CAAGCTACTT TTGGTAA
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Protein sequence | MLRTAITMAL TVAATMASSF SVSANSATSI EKSVKKVSEK DVEKINIEGS ATANESPVGT FNSPISNLEY DPRVDLQSRN MAEAQADVTI RGGIFENTGF SVGSATLVDP QTGHYVAEIP IAPEMLTAPA ILTGVDNSLY GANSSVGSVA YKWRPIQTAG SVSLGAGRNN FNMQRVHNAI SWSVDDSSQW KAGGEGEYSR SESDGTIDKG DHRFERASGR VQLISDTSQT DLFFGYQQKF FGWPNLYTPF NVNETEDLET RLLIFNHQQQ YAQESTVEVS AYYRQQNDHY VFSRENPEAF QAFHETKVKS VAVSGRHMTD SKLALNYAAQ FTADEIESTT LENNFTSRDY YKFSVVPEYA VALQDNEQLT FRVGAAFDDT NRDDSRVSVI SDIVWLKTNA DKSTRTVNFS YSEATQVAGY TAIGGSTSSG LFRSNDTLER ETSKNLELGV SLDKASWRVD SAVFYRWDNE LTDWTYRFDS TSARVANPVD IETIGVELMA IARLESADVV TSYTYLDKSE DYRDENIDAS FYALNYPPHR FTLGVIWYPA EALELKVDNE WRKQEDNLLR NGGDSAFFTH ISLTYSPPQI DGFNVVVAVD NLWDESFEEI PGTPGRSDQL SVTASYFW
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