Gene Patl_2617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2617 
Symbol 
ID4174377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3180605 
End bp3181474 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content52% 
IMG OID638055638 
Producthypothetical protein 
Protein accessionYP_662186 
Protein GI109898931 
COG category[R] General function prediction only 
COG ID[COG5006] Predicted permease, DMT superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAATCA ATCGTGTACT TCTAACGGCT GTGGGCAGTG TGTTACTCGC TATGGTGACT 
ATTCAGTCTG GTGCGTCTTT AGCCAAGCAG CTTTTCCCTA TCGTTGGCCC AGAAGGCACC
ACGGCACTGC GTTTGGGATT TGCTGCTGCG GTACTTTGGT TAGTATTTCG TCCATGGCGA
GCACTCCCTC AGGGGCGAGA TTGGCGCAGC ATTATTGTTT ACGGCCTGTG CTTAGGCGGT
ATGAATATTC TGTTCTACTT GGCGATTGAA CGTATTCCCT TAGGCATTGC AGTTGCCCTT
GAATTCACCG GCCCGCTGGC TGTGGCTTTG TTTTCATCTA AACGAAAAAG TGACCTATTG
TGGGTGGCTT GCGCCATAGC GGGGATCGTA CTGCTAATGC CTGATTTATC CAGCGCACAG
GGCCTCGACC TTACCGGCGC GCTAATGGCA CTAGGTGCTG GTGCATGCTG GGCAGGTTAT
ATTTTATTTG GCACCCGTAC AGGGAAACAA GCGTCTGGTG GCATCACTGT CGCTTTAGGC
ATGACGGTGG CAGCCATTGT GCTGGTCCCC GTTGGCGCGG TGACCCAAGG CTTAGCCTTA
TTTAGCTGGG AAGTACTGCC TCTAGGATTA TTGGTGGGAG TGTTATCTAG CGCTCTACCC
TACTCTTTGG AAATGGTCGC TCTTAGAAAT ATGCCGACAC AAGCGTTTAG CGTACTCATG
AGTTTAGAGC CCGCCATCGC GGCCTTGGCG GGCTTGGCTA TTTTGGGCGA GCACTTGAGC
CTGTTGCAAT GGGCTGCTAT TGCCTTGGTG ATTGTCGCGT CGATCGGCAG CAGCTTTACC
CCTAAAAAAG CGGTCAATAT GGGCGTGTAG
 
Protein sequence
MQINRVLLTA VGSVLLAMVT IQSGASLAKQ LFPIVGPEGT TALRLGFAAA VLWLVFRPWR 
ALPQGRDWRS IIVYGLCLGG MNILFYLAIE RIPLGIAVAL EFTGPLAVAL FSSKRKSDLL
WVACAIAGIV LLMPDLSSAQ GLDLTGALMA LGAGACWAGY ILFGTRTGKQ ASGGITVALG
MTVAAIVLVP VGAVTQGLAL FSWEVLPLGL LVGVLSSALP YSLEMVALRN MPTQAFSVLM
SLEPAIAALA GLAILGEHLS LLQWAAIALV IVASIGSSFT PKKAVNMGV