Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2604 |
Symbol | |
ID | 4174364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 3166306 |
End bp | 3168426 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638055625 |
Product | TonB-dependent receptor |
Protein accession | YP_662173 |
Protein GI | 109898918 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000145461 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACGA AACACTCAAC TGTGTTAATC GCGGTATTAG CTGCGTTAAC GTCAATGGCG CACGCCCAAG AAAAGAACTT ACACAAAGAT GAAGCGGACT TAGAAACGCT ACTTATCACT GCATCACCCA TCAGCAAGAC GGTACTGCAA TCCAGTACGC CAGTGTCTAT TTTAAGTGGC GAGGAATTAG ACCAAAATCA GGCTGCTACC TTGGGGGACA CCTTAAGTAA TGTGCCGGGT GTGCATAGTT CGTACTACGG ACCGGTGGCA AGTAGCCCAA TTATTCGTGG CCTAGATGGC CCTCGTATTA AGGTAGTGCA AAATGGTTTG GACGCATCCG ACGCCTCTCG AGTAGGGCCT GATCACCAAG TTGCCACTGA AACCTCAACG GCCAGCCAAA TTGAAGTACT AAGGGGGCCT GCAACCTTAC TTTACGGCAG TGGTGCCATT GGTGGTGTGG TTAACGTGGT AGATAACCGC TTGCCAGCCC AGCGCCAAGA AGGACTAACC GGTGAGGTAT TCGCCCAATA CGACAATGTT GCAGATGCGA AAACGGTATC TACTGATTTG AACATGGGAA CTGGGGATTT TGTGTTTCAT GTTGACGGCT ACAATCGCGA CACCGACGAT TATAAAATTC CTGTGCCTGG CAATGTGGAT GATGAAGGTG GTAGCGGCGA ATTAGATAAT TCCTCCGTCA GTGCTCACGG TTTTAACCTA GGGGGTGGTT GGATCACCGA TGATACGCGC GTTGCATTGT CTTACGGTCG CATGGATTCA GAATACGGCT TGCCCGTAGA AGAAGACGTT TACATTAAAT TGAAACAGGA CCGCTACCAG GCTGTTGTTG ATTGGAAAAA CCTCGATGGT TTCTTTGAGG CGGTACATTT TCAAAATGGC TTCACTGATT ACCAGCACAC GGAATTTGAA GGTGAAGAAG TAGGCACCAC CTTTAAAAAC AAATCGGTGG AATCGCGCTT ATGGGCGGAT CATCAAGAAG TGGCTGGCTG GAAGGGGGTT ATGGGCGCTC ATTATAACTA CAGTGATGCC TCAGCGCTGG GTGAGGAAGC CTTTTCGCCC CCCACCAAGA CCAATTCAAT CGCCGCATTT GTTATGGAAG AGCACGACTC AGGGCCGTTG CTCTGGCAAC TAGGCGCAAG AGTTGAAACC CTGACCCATG AGGTTGATAA CAGTTTCTAT GATCAGCTAG ACACAAATAA CAGCATCGGT TTTAACGATA AAGATTACAC TTCGTTCTCA GGCTCAGCCG GTGTGGTGTG GAGCCTAAAT GAGCATCACT CTTTAGCGTT CAATTATGCC TATTCCCAGC GGGCGCCTTC AGCCTCTGAA ATGTTTTCAT ACGGCCCTCA TGTGGGCTCG CAAACCTATG AAATTGGGGG CGGTTTTAAC ATCGATGAGC AAAACGGTGT TTACAGTGTT AATCAGGCAC CTAGCAGTCT AAACAAAGAA GAATCTAACA ATATAGATGT GACGTACCGT TACCAAAACG ACACATGGAA CGCCACCGCA AGCGTATTTT ACAACCAAGT AGGCGATTAT ATATTCGAGC AAAGTACTGG CTTAGTGTAT GCCGGTGGTG AACTAATCAC CGCAGAAAAT TATGCTGCAA ATGTGGCATT AAACGGCGAA TATGAAGAAG AAACCGATGG ATTATCTGTT ATCAACTTTG AGCAAGAAGA CGCCAAATTG TATGGCTTTG AAGCCCAAGT TGATGTGCAC ATGACTGAAT CGCTGCGCTG GGAAGTCTTC AGTGATTATA CCCGTGCAGA GTTGGATGAA GGGGGCAACG TGCCGCGAAT TCCACCGCTG CGGGTCGGTA GCTCGCTGCA TTATGAGCAA GGCAATTGGC ACGGCGAAGT CGAAGTGGTG CGCAACAGTA AACAAGATAA AATTGCTGCG TATGAAACGG ACACAGACGG CTATACCATG TGGTCAGCTG CAGCGAATTA CTATCTAGCG CTTGATGATC TTGATATGAC GTTCTACTTA AAAGGCAGCA ATTTAACTAA TGAAGAGGGA CGAGTGCACT CATCTTACGT AAAAGATGAA ATACCTCTGC CTGGTCGTTC AGTTAGCCTG GGTGTGCGCG CTCGGTTTTA A
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Protein sequence | MKTKHSTVLI AVLAALTSMA HAQEKNLHKD EADLETLLIT ASPISKTVLQ SSTPVSILSG EELDQNQAAT LGDTLSNVPG VHSSYYGPVA SSPIIRGLDG PRIKVVQNGL DASDASRVGP DHQVATETST ASQIEVLRGP ATLLYGSGAI GGVVNVVDNR LPAQRQEGLT GEVFAQYDNV ADAKTVSTDL NMGTGDFVFH VDGYNRDTDD YKIPVPGNVD DEGGSGELDN SSVSAHGFNL GGGWITDDTR VALSYGRMDS EYGLPVEEDV YIKLKQDRYQ AVVDWKNLDG FFEAVHFQNG FTDYQHTEFE GEEVGTTFKN KSVESRLWAD HQEVAGWKGV MGAHYNYSDA SALGEEAFSP PTKTNSIAAF VMEEHDSGPL LWQLGARVET LTHEVDNSFY DQLDTNNSIG FNDKDYTSFS GSAGVVWSLN EHHSLAFNYA YSQRAPSASE MFSYGPHVGS QTYEIGGGFN IDEQNGVYSV NQAPSSLNKE ESNNIDVTYR YQNDTWNATA SVFYNQVGDY IFEQSTGLVY AGGELITAEN YAANVALNGE YEEETDGLSV INFEQEDAKL YGFEAQVDVH MTESLRWEVF SDYTRAELDE GGNVPRIPPL RVGSSLHYEQ GNWHGEVEVV RNSKQDKIAA YETDTDGYTM WSAAANYYLA LDDLDMTFYL KGSNLTNEEG RVHSSYVKDE IPLPGRSVSL GVRARF
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