| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2577 |
|---|
| Symbol | |
|---|
| ID | 4174337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3123109 |
|---|
| End bp | 3125001 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055598 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662146 |
|---|
| Protein GI | 109898891 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAC GTCTACTGAT ACCCTTCGCA CTGAGCGCGG TAGTGAGTGC TTGTTCTACT
TCCCATGACC AAGGTGCTAG TGCTTTGCAA GCGCCGAATG CACAGCAAGC ACAAAACGTG
GTCAATACCC AGCGTAATCA AGCGCAGCTG CAAACCTTAG TGGAGCAGTA CACTAAGCAG
TTTTTGCGTT ATGAGCCGCT ATTATCCACC GCGATAGGTG TACCAGAATC CTTAGCGGGA
GCGGGTTACA ACAGGCGTTT TACCGATTTT TCTGCCATGG GCATGCGCAA GCTGCAAGAC
GATATGAATA CGGCAGCCAT GGCGGTGGCG AAAGTTGATA ACAAGGGTTT CGCTCAAGAT
GAAAAGCGAC ATCAACAAAT AGTGACTGAC ATTTTACGCT ATTACGCTGG CTTCTCTGAA
TTTCACGGCG GTTACATTGA CACATGGGCC GGGCATTTAC CCTATATTAT TAACCAGCTT
TCAGGTCCGT TAATCGATGT TCCTAAAGTG ATGCAAGTGC AGCAGCCTGT ATCGAATTTT
GAAGAAGCAC AGGATTATAT CGCGCGATTA CAACACTTCG ATTTTCTCGT TGCCGGTGTG
GTTGAAAAAT ATAAAACGGA TAAATTAAAC GGTGTGCAAT TACCGAAAAA GCTCTATCCA
AAAACCTTAG CGTATTTTGA GAACTTTTTA GGCAGCCCGG TTGCTGAACA TGCCTTAGTG
ACCTCGTTCG CCAAAAAACT TGAACAAACG CCCCTAAGCC AAGATGAACA AACCGCTTTG
ATTAAGCAGG CACAAGAGGC ATTAACTAAT GTGGTTTACC CTGCTTATCA AACCGTGAAA
GACACTTTAT TAGCGACCCA AGCGAACGCG CCTCAAGGGG ATGGAATTTG GGCGCAGCCT
AATGGCGACG CTATGTATCT GCACGAGGTG CGGTATTTAG GTGATTCAAG CATCACACCG
GATGACATTC ACCAGTTAGG GTTAGATGAA GTCGCGCGGA TCAGCACTGA AATGGACACT
ATTTTGCGTG CTCAGGGTTA CGACGAGGGG CCTGTTGGTG AGCGTATGGT TTTGCTGGCT
GAGCAACCTG AATTTTTATA TCAAGACAGT GACGAAGGGC GTGCGCAGCT ATTAAATGAT
CTTAACGGAC AAATAGCCGA AATAATGGCT AAAACTGATA TGTATTATGG CGCTTTGCCG
ACGCAGAAGG TTGAGGTCAA GCGTATTCCT AAAGTCACCG AAGCAGGGGA AGCCGGTGGC
TATTATTCCC AGCCATCATT AGATGGCGAG CGCCCAGGGA TTTTTTGGAT TAACCTTCGA
GACATGTCAG CTGTCCCCAG CTTCTCGCTA AAAACACTGA CTTACCATGA AGCTGTACCT
GGGCATCATT TTCAGATTGC CCTTAACATG GCACAGCAAG ATATAGGTCT ACTTAGGCAG
AACGCACCTT TTAATGCGTA TGTGGAAGGT TGGGCGCTTT ATTCCGAGCT AGTCGCCAAA
GAAATGGGCA TGTATGAAAA TGATCCCTTT GGTGATTTAG GGCGCTTACA AGCAGAGCTA
TATCGTGCGG TGCGCTTAGT CGTGGATACT GGGCTGCACC GTAAAAAGTG GACGCGTGAA
CAAGCAATTG AATACTTTCA TGAAACCACG GGCACGGGCA TGACGGATGT GATCGCAGAA
GTTGAGCGTT ATATGGCGCT ACCGGGCCAA GCCCTTGGTT ACAAGCTCGG CATGCTGCAG
TTTGTTGAGT TGCGCCAAAT GGCTGAGCGA GAGCTGGGAA GTGAATTCGA TTTGAAACGT
TTTCATGATC TGTTGCTTTT ACCCGGTGCC CGCCCCATGT CAGTAGTTAG AAGTGATGTC
AAACGCTGGA TTGCCAGTAA TGGTGCGGGT TAA
|
|---|
| Protein sequence | MIKRLLIPFA LSAVVSACST SHDQGASALQ APNAQQAQNV VNTQRNQAQL QTLVEQYTKQ
FLRYEPLLST AIGVPESLAG AGYNRRFTDF SAMGMRKLQD DMNTAAMAVA KVDNKGFAQD
EKRHQQIVTD ILRYYAGFSE FHGGYIDTWA GHLPYIINQL SGPLIDVPKV MQVQQPVSNF
EEAQDYIARL QHFDFLVAGV VEKYKTDKLN GVQLPKKLYP KTLAYFENFL GSPVAEHALV
TSFAKKLEQT PLSQDEQTAL IKQAQEALTN VVYPAYQTVK DTLLATQANA PQGDGIWAQP
NGDAMYLHEV RYLGDSSITP DDIHQLGLDE VARISTEMDT ILRAQGYDEG PVGERMVLLA
EQPEFLYQDS DEGRAQLLND LNGQIAEIMA KTDMYYGALP TQKVEVKRIP KVTEAGEAGG
YYSQPSLDGE RPGIFWINLR DMSAVPSFSL KTLTYHEAVP GHHFQIALNM AQQDIGLLRQ
NAPFNAYVEG WALYSELVAK EMGMYENDPF GDLGRLQAEL YRAVRLVVDT GLHRKKWTRE
QAIEYFHETT GTGMTDVIAE VERYMALPGQ ALGYKLGMLQ FVELRQMAER ELGSEFDLKR
FHDLLLLPGA RPMSVVRSDV KRWIASNGAG
|
|---|
| |