| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2566 |
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| Symbol | ipk |
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| ID | 4174321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3110925 |
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| End bp | 3111785 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055583 |
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| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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| Protein accession | YP_662136 |
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| Protein GI | 109898881 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
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| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.733028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACCAAA CAATAGATTG GTGGCCAAGC CCCGCCAAAT TGAACCTGTT TTTACACATC
AATGGCCGTT ACCCCAACGG CTATCATCAA TTGCAAAGCC TATTTCAACT ATTGGATAAA
GGCGATGAAT TGGCTTTTAC GGTTACGCCC CATGCTGAAA TTACATTGCT CACGCCAATA
GACGGGGTAG CAAATGAAGA CAACCTTATC GTTAAGGCGG CACGTTTATT ACAAACACAT
ACGGGCTGCT CCGAAGGTTG CGACATCCAA TTACGTAAAG TGTTGCCCAT GGGGGGGGGA
ATTGGAGGAG GCTCGTCTAA TGCGGCGACC ACATTAATTG CCCTTAACTA TTTATGGAAA
TGTAATCTAA GCCTGACAGA ATTGGCGGAA TTAGGCCTAG CGTTAGGTGC TGATGTGCCG
GTTTTTGTCA TGGGCAATAC CGCTTTTGCT CAGGGTGTTG GCGAGCAGCT AACGCCTGTA
AATATTGCGC AGAAGCACTA CCTGGTTGTG TTTCCTGAAT GTCACGTGTC TACCGCTGAG
GTATTTAACG CCCCTGATTT GCCCAGAAAT ACACCACTTA TTTCTTGGCA AGAGTATGAT
TTTGACCAAA CACATAACGA CTGCCAGCAA TTAGTCTGTA ATCGCTTTGA GAATGTTGCA
AATACATTAC GCTGGTTGTT AGAATACGCG CCGTCTCGAA TGACAGGCAC AGGTGCTTGT
TTATTTGCGG TCTTTACCAG TAACCAAGAA GCAGAAAATG TACTTGCTAA TTTACCATCA
GGTTGCTCAG GTTTTGTCTC CAAAGGAGTC GATGTGTCTC CCGTGCACGA CAAATTAGCG
CACCTAGGTA GCATTAGCTA G
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| Protein sequence | MDQTIDWWPS PAKLNLFLHI NGRYPNGYHQ LQSLFQLLDK GDELAFTVTP HAEITLLTPI
DGVANEDNLI VKAARLLQTH TGCSEGCDIQ LRKVLPMGGG IGGGSSNAAT TLIALNYLWK
CNLSLTELAE LGLALGADVP VFVMGNTAFA QGVGEQLTPV NIAQKHYLVV FPECHVSTAE
VFNAPDLPRN TPLISWQEYD FDQTHNDCQQ LVCNRFENVA NTLRWLLEYA PSRMTGTGAC
LFAVFTSNQE AENVLANLPS GCSGFVSKGV DVSPVHDKLA HLGSIS
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