| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2564 |
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| Symbol | |
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| ID | 4174319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3108923 |
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| End bp | 3110194 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055581 |
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| Product | shikimate/quinate 5-dehydrogenase |
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| Protein accession | YP_662134 |
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| Protein GI | 109898879 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0373] Glutamyl-tRNA reductase |
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| TIGRFAM ID | [TIGR01035] glutamyl-tRNA reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.508916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTAA TTGCCTTTGG GATAAACCAT AAAACTGCGC CAGTAGAATT GCGAGAAAAA
GTCGCTTTCT CGCCGGACGC TATGGTCGAA GCCTTGAAAT CTTTAGCACA CTTAACAGGT
GCTGATGAAT CTGTGATTGT CTCTACCTGC AATCGGACAG AGATATACGC GCAAGCGGAA
AACCTCACCG CAGACGCGCT CACAACATGG CTCGCTGAAT TTCATCAAGC CAAAGCGGAC
GAACTAGGCC TTAATAGTTA CATATATCAT CAAGAAGACG CCATAAAACA CATTATGCGT
GTAGCCTGCG GTTTAGACTC ATTAATACTA GGTGAGCCGC AAATTTTAGG GCAGGTTAAG
CAGGCCTTTG TCAGTGCTAA AGACTCTGGC GTTATTAAAA GTGATTTTGA ACGCCTGTTC
CAGCAGACTT TTTCAGTGGC CAAGCGGGTG CGCAGCGAAA CGGAAATTGG TTCTAATGCT
GTATCAGTGG CTTATGCCTC GGTACAATTA GCCAAACATA TATTCTCTTC ATTAAAGAAA
AGTAATGTGT TGCTCATCGG TGCGGGTGAA ACCATAGAGC TGGTTGCTAA GCATATGCAT
GAGCAAGGGG TTAAAAAACT CAGCGTAGCC AACAGAACAT TGGCACGCGC CGAAGCCATT
GCTCAGCCGC TGGGAGCAAC AACCCTAACC TTGACCCAAA TTCCAGCGCA TTTAAAGGAC
GCCGATATTG TGATCAGCTC TACGGCCAGT CAGTTGCCTA TACTCGGCAA AGGGTTAGTT
GAGCGAGCGT TAAAAGACAG ACGCCACAAG CCTATGTTCT TGGTTGATTT AGCCGTACCC
AGGGATATCG AAGCCGAAGT GGGTGAGCTC GATGATGCCT ACCTATATAC CGTGGATGAT
TTACAGCAAA TTGTCGAAAA GAACATTGAG TCGCGCCAGC ATGCTGCTTT GCAAGCTCAG
CAGATGATAG AAGAACAAGC TCAGCAATAC ATGCTATGGC GCCAAGGACA ATCATCTATT
GACGTATTGC GTGATTTTCG CCAGCAAAGT GAGAGTCAAC GAGATACGTT GATTGCCAAA
GCATTAAATC AGTTAGCAGA CGGCAAGGAA GCGGAGCAAG TTATCAAAGA GTTAGCGAAT
AAGTTAACGA ACTCGTTAAT ACATGCGCCG ACCAAAGCAT TAAAAAAAGC TGCTATGCAG
CAAGATAATA AAAATATGAG TCTATTACAG GATGCGCTAG GGTTAGCTCG CGCAAACGAC
TCATCTAAGT AA
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| Protein sequence | MTLIAFGINH KTAPVELREK VAFSPDAMVE ALKSLAHLTG ADESVIVSTC NRTEIYAQAE
NLTADALTTW LAEFHQAKAD ELGLNSYIYH QEDAIKHIMR VACGLDSLIL GEPQILGQVK
QAFVSAKDSG VIKSDFERLF QQTFSVAKRV RSETEIGSNA VSVAYASVQL AKHIFSSLKK
SNVLLIGAGE TIELVAKHMH EQGVKKLSVA NRTLARAEAI AQPLGATTLT LTQIPAHLKD
ADIVISSTAS QLPILGKGLV ERALKDRRHK PMFLVDLAVP RDIEAEVGEL DDAYLYTVDD
LQQIVEKNIE SRQHAALQAQ QMIEEQAQQY MLWRQGQSSI DVLRDFRQQS ESQRDTLIAK
ALNQLADGKE AEQVIKELAN KLTNSLIHAP TKALKKAAMQ QDNKNMSLLQ DALGLARAND
SSK
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