Gene Patl_2563 details

Gene Information

• Locus tag: Patl_2563
• Symbol: prfA
• ID: 4174318
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3107733
• End bp: 3108821
• Gene Length: 1089 bp
• Protein Length: 362 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638055580
• Product: peptide chain release factor 1
• Protein accession: YP_662133
• Protein GI: 109898878
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.273749
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAT CAGTTCAGCG TAAATTAGAG TCATTAACGG AGCGCTTTGA AGAGGTACAG 
GCATTAGTTA GTCAGCCTGA GATTATTGCC GATCAAGATA AATACCGCGC ATTGACCAAG 
GAATACTCGC AACTCGAGGG CGTGGTTAAA TGTTTTGCAG ACTATCAAGG TGCTCAGGGA 
GATTTTGAAT CTGCGCAAGA AATGATGCAA GAAAGCGATC CTGAAATGCG TGAAATGGCC 
CAAGAAGAAT ATAAATCGTC TAAGCAGGCC ATTGAACAGT ATGAAGATGA ATTGCAGATA 
CTGTTGCTAC CTAAAGATCC TAACGATGAA AGCAATTGCT TCATTGAAAT ACGCGCAGGT 
GCAGGCGGTG ATGAAGCGGC GATTTTTGCT GGGGATTTGT TTCGCATGTA CAGCCGTTAC 
GCTGAAGCAC GTCGCTGGAA AGTCGAAGTG GTTACCATGA ATGAAGGCGA CCATGGCGGT 
TACAAAGAAG TGATTGCAAA TATTATTGGT GACGGCGCCT ATGGGGTGCT TAAGTTTGAA 
TCCGGTGGTC ACCGCGTTCA GCGTGTGCCT GAAACTGAAT CGCAAGGGCG AATTCATACT 
TCGGCGTGTA CTGTGGTGGT TATGCCTGAA GTACCAGAAT CCGAAGCGAT TGAGGTGAAT 
AAAGCTGACC TTAAAATTGA TACGTTTCGT GCCTCGGGTG CCGGTGGTCA GCACGTCAAC 
AAAACTGACT CCGCTATTCG TATTACTCAC GTACCATCCG GTATTGTGGT GGAATGTCAG 
GATGAGCGCT CACAACATAA AAACCGCGCC AAAGCCATGG CGGTATTGCA ATCACGTTTA 
AACAAACTTG AAGAAGAAAA GCGTCAAGCA GAAGAAACCT CGACCAGGCG CAATTTGGTA 
GCAAGTGGCG ATCGCTCCGA GCGTATTCGA ACTTACAATT TCCCTCAAGG GCGAGTGACT 
GATCACCGTA TTAATTTGAC CTTATATCGT CTAGATGACG TTGTGGCGGG TGATTTAGAC 
GCGGTGCTTG AACCTATTCG TCAAGAGCAC CAAGCTGATT TGTTAGCGTC ATTATCTGAC 
GAAGGCTAA 

 

Protein sequence

MKESVQRKLE SLTERFEEVQ ALVSQPEIIA DQDKYRALTK EYSQLEGVVK CFADYQGAQG 
DFESAQEMMQ ESDPEMREMA QEEYKSSKQA IEQYEDELQI LLLPKDPNDE SNCFIEIRAG 
AGGDEAAIFA GDLFRMYSRY AEARRWKVEV VTMNEGDHGG YKEVIANIIG DGAYGVLKFE 
SGGHRVQRVP ETESQGRIHT SACTVVVMPE VPESEAIEVN KADLKIDTFR ASGAGGQHVN 
KTDSAIRITH VPSGIVVECQ DERSQHKNRA KAMAVLQSRL NKLEEEKRQA EETSTRRNLV 
ASGDRSERIR TYNFPQGRVT DHRINLTLYR LDDVVAGDLD AVLEPIRQEH QADLLASLSD 
EG