Gene Patl_2552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2552 
Symbol 
ID4174307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3095373 
End bp3096137 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content47% 
IMG OID638055569 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_662122 
Protein GI109898867 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0672528 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGAAA AATTCAGTTT AGAAGGTAAA GTTGCTCTAG TAACGGGGTG TAAGCGCGGC 
ATAGGTAAAG GGATCGCGCT AGGGCTGGCC GAAGCAGGCG CGGATATCAT TGGCGTTTCA
GCAAGCTTAG CGCTTGAAGG TTCAGACGTT GAAAACGAAG TGAAAGCACT GGGTCGTAAT
TTCAAAGGTT ATCAATGTGA CTTTTCAGAC CGTGATGCGT TGTACGCTTT TATTAAAGAA
GTTAAAGCTG ATTTTCCTAA AATCGATATT TTGGTGAATA ACGCAGGCAC TATTTTGCGT
GCTCCCGCAG CGGAACATGG CGATGATTTA TGGGATAAAG TGATTGACGT AAACTTAAAC
TCTCAGTTCA TTCTTAGCCG AGAAATTGGC AAAGAGATGG TGGCCCGCCA GTCTGGAAAA
ATCATTTTCA CTGCATCATT ACTCACCTTT CAAGGCGGCA TTACGGTACC GGGCTACGCG
GCAAGTAAAG GCGCTATTGG TCAATTGGTG ATGGCACTGT CAAACGAATG GGCAGGCAAA
GGCGTGAATG TTAACGCTAT AGCCCCGGGT TATATTGATA CTGACAATAC ACAAGCATTG
CGCGAAGATA GCGAGCGCTC GGCGGCAATT TTAGGGCGAA TTCCGCAAGG TCGCTGGGGC
AACCCTGACG ACTTCAAAGG GCCTGCGGTC TTTTTAGCTT CTGACGCTGC CAGTTACGTC
AATGGCGCTA TTTTATTGGT CGATGGCGGC TGGATGGGGA GATAA
 
Protein sequence
MLEKFSLEGK VALVTGCKRG IGKGIALGLA EAGADIIGVS ASLALEGSDV ENEVKALGRN 
FKGYQCDFSD RDALYAFIKE VKADFPKIDI LVNNAGTILR APAAEHGDDL WDKVIDVNLN
SQFILSREIG KEMVARQSGK IIFTASLLTF QGGITVPGYA ASKGAIGQLV MALSNEWAGK
GVNVNAIAPG YIDTDNTQAL REDSERSAAI LGRIPQGRWG NPDDFKGPAV FLASDAASYV
NGAILLVDGG WMGR