Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2552 |
Symbol | |
ID | 4174307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3095373 |
End bp | 3096137 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638055569 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_662122 |
Protein GI | 109898867 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0672528 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGAAA AATTCAGTTT AGAAGGTAAA GTTGCTCTAG TAACGGGGTG TAAGCGCGGC ATAGGTAAAG GGATCGCGCT AGGGCTGGCC GAAGCAGGCG CGGATATCAT TGGCGTTTCA GCAAGCTTAG CGCTTGAAGG TTCAGACGTT GAAAACGAAG TGAAAGCACT GGGTCGTAAT TTCAAAGGTT ATCAATGTGA CTTTTCAGAC CGTGATGCGT TGTACGCTTT TATTAAAGAA GTTAAAGCTG ATTTTCCTAA AATCGATATT TTGGTGAATA ACGCAGGCAC TATTTTGCGT GCTCCCGCAG CGGAACATGG CGATGATTTA TGGGATAAAG TGATTGACGT AAACTTAAAC TCTCAGTTCA TTCTTAGCCG AGAAATTGGC AAAGAGATGG TGGCCCGCCA GTCTGGAAAA ATCATTTTCA CTGCATCATT ACTCACCTTT CAAGGCGGCA TTACGGTACC GGGCTACGCG GCAAGTAAAG GCGCTATTGG TCAATTGGTG ATGGCACTGT CAAACGAATG GGCAGGCAAA GGCGTGAATG TTAACGCTAT AGCCCCGGGT TATATTGATA CTGACAATAC ACAAGCATTG CGCGAAGATA GCGAGCGCTC GGCGGCAATT TTAGGGCGAA TTCCGCAAGG TCGCTGGGGC AACCCTGACG ACTTCAAAGG GCCTGCGGTC TTTTTAGCTT CTGACGCTGC CAGTTACGTC AATGGCGCTA TTTTATTGGT CGATGGCGGC TGGATGGGGA GATAA
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Protein sequence | MLEKFSLEGK VALVTGCKRG IGKGIALGLA EAGADIIGVS ASLALEGSDV ENEVKALGRN FKGYQCDFSD RDALYAFIKE VKADFPKIDI LVNNAGTILR APAAEHGDDL WDKVIDVNLN SQFILSREIG KEMVARQSGK IIFTASLLTF QGGITVPGYA ASKGAIGQLV MALSNEWAGK GVNVNAIAPG YIDTDNTQAL REDSERSAAI LGRIPQGRWG NPDDFKGPAV FLASDAASYV NGAILLVDGG WMGR
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