Gene Patl_2544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2544 
Symbol 
ID4174299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3084705 
End bp3086423 
Gene Length1719 bp 
Protein Length572 aa 
Translation table11 
GC content43% 
IMG OID638055561 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_662114 
Protein GI109898859 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACCAAG AAAGGCTAGA AGCCAAACAA ATTGACTCCA ACACTAGCCT ACTAAGGCCC 
GTGGCCTATT TTTTTGGTTT TCTTTATGCT GTTCTAACTG TGGCGCATTT CTTCTTATTA
GAAGAGCCTT TTAAGTGGAT TTTGTTCTTA GCTGCGCTAG CCACTGCCGT AATTAATACC
GCCGTTGGTT TTCGAGCGAA TGATATCGAT CCCCCGCGTA AAGAAGTTGT CCTTTTACTG
CTTATATTTT TAGCCAGTGC AAATAGCTTT TTGCATCTTT GGTTGTCTCA AGCGCCCGAA
CAAACCACCA ATATATTCGT TACCGTCATT GCCTCTGGTA TCGTTTTGTC GCATCGAGCT
TTGTGGTGCA GCGCAGTGCT GTTTAATTGG ATTGGGTGGA TAGTCATCAG TAACGTTTTA
CAAATGGCTC TCATTCAACA TTTTTTCTTT GCGATGGCCA TGAGTACCTT ACTCAGTTGG
TTTGCCCATT TGGCTCGGAA AAACTTGGTA GAAAAACAAC AAGAGCTTGA ACGGGAACGC
GATATCGCCC TTAAGCACGA AAAAGAGGCT AAAGCTGCCA CAGAAGCCAA AAGTGCTTTT
TTGGCAAATA TGAGTCATGA AATTCGCACG CCCATGAACG GTGTTATCGG CATGATCGAA
TTGGTGTCGC AAACCAAGCT CGAAAAAGTG CAGCAAGATT ACATAGCAAC AGCAAAGCGC
AGCGCTGACT CACTTATGGT GATCATTAAC GATATTCTCG ATTTTTCTAA AATAGAGGTG
GGTGAGCTTA CCATTGAGTT AGTGGAATTT GATGTTGAGC AATTTTTTGC AGAATTGCTT
CACGACCAAC AATTTCAAGC GAGTGAAAAA GGACTAAAAC TGTCGCTTAT AAAAGAAGAA
TTGCAACACA CCAAAGTGGT TGGTGATCCC TATCGAATTA GGCAAATTGT CAATAACCTA
TTGTCTAATG CGATCAAGTT TACCCAGTCA GGCCATATAC AAGTGCGTTA TAGCTTGACG
AGTTCAAGTG ACAACTTGGA GTTGCACTGC GCTGTGACAG ACACAGGCAT AGGCGTGAGT
AATGAGGCTT TGCCTTATCT CTTTGATTCA TTCTCTCAAG CTGATACATC AACAACGAGA
AAGTTTGGTG GTACCGGGCT TGGTTTATCA ATTACAAAAC AGCTTTGCAA TTTGATGGGC
GGAGACATAA AAGTGCAGAG TCAATTAGGT AAAGGCTCAA CCTTCGAATT CTCTGTCAAA
CTTGCTTTTT CACAATGTTC AAACACCGAG CTAGACAAGC CTAGCGCAGC CGTAACATTT
CCAAACGTAC AAGTTTTGTT GGTTGAAGAC AATTTTATTA ATCAAGAGGT TATGTTGGCA
ATTCTGCAAG GGTTAGCAGT AAGAGTGTAC ATCGCCAATG ATGGGCTTGA GGCAATCTCC
ACCTTGAGTC GTTGCCAAAA AACACGGTTC GATCTCATTC TTATGGATTG CCAAATGCCA
AACCTTGATG GTTACGAAAC CACTAAACGC ATTCGCGCGG GTGAAGCGGG CGACATCTTT
AAAGACGTTC CCATCGCTGC GCTAACGGCG AACGTGCTAG ATAGCGAACG GTTAAAATGC
TTCGAATCAG GAATGAACGA GTATTTGACT AAGCCTGTCG ATTTTGACGC ACTAAAATCG
ATTTTGTACA AATATCAACA CGCTAATCTC GAACAGTAA
 
Protein sequence
MNQERLEAKQ IDSNTSLLRP VAYFFGFLYA VLTVAHFFLL EEPFKWILFL AALATAVINT 
AVGFRANDID PPRKEVVLLL LIFLASANSF LHLWLSQAPE QTTNIFVTVI ASGIVLSHRA
LWCSAVLFNW IGWIVISNVL QMALIQHFFF AMAMSTLLSW FAHLARKNLV EKQQELERER
DIALKHEKEA KAATEAKSAF LANMSHEIRT PMNGVIGMIE LVSQTKLEKV QQDYIATAKR
SADSLMVIIN DILDFSKIEV GELTIELVEF DVEQFFAELL HDQQFQASEK GLKLSLIKEE
LQHTKVVGDP YRIRQIVNNL LSNAIKFTQS GHIQVRYSLT SSSDNLELHC AVTDTGIGVS
NEALPYLFDS FSQADTSTTR KFGGTGLGLS ITKQLCNLMG GDIKVQSQLG KGSTFEFSVK
LAFSQCSNTE LDKPSAAVTF PNVQVLLVED NFINQEVMLA ILQGLAVRVY IANDGLEAIS
TLSRCQKTRF DLILMDCQMP NLDGYETTKR IRAGEAGDIF KDVPIAALTA NVLDSERLKC
FESGMNEYLT KPVDFDALKS ILYKYQHANL EQ