Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2544 |
Symbol | |
ID | 4174299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3084705 |
End bp | 3086423 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638055561 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_662114 |
Protein GI | 109898859 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAACCAAG AAAGGCTAGA AGCCAAACAA ATTGACTCCA ACACTAGCCT ACTAAGGCCC GTGGCCTATT TTTTTGGTTT TCTTTATGCT GTTCTAACTG TGGCGCATTT CTTCTTATTA GAAGAGCCTT TTAAGTGGAT TTTGTTCTTA GCTGCGCTAG CCACTGCCGT AATTAATACC GCCGTTGGTT TTCGAGCGAA TGATATCGAT CCCCCGCGTA AAGAAGTTGT CCTTTTACTG CTTATATTTT TAGCCAGTGC AAATAGCTTT TTGCATCTTT GGTTGTCTCA AGCGCCCGAA CAAACCACCA ATATATTCGT TACCGTCATT GCCTCTGGTA TCGTTTTGTC GCATCGAGCT TTGTGGTGCA GCGCAGTGCT GTTTAATTGG ATTGGGTGGA TAGTCATCAG TAACGTTTTA CAAATGGCTC TCATTCAACA TTTTTTCTTT GCGATGGCCA TGAGTACCTT ACTCAGTTGG TTTGCCCATT TGGCTCGGAA AAACTTGGTA GAAAAACAAC AAGAGCTTGA ACGGGAACGC GATATCGCCC TTAAGCACGA AAAAGAGGCT AAAGCTGCCA CAGAAGCCAA AAGTGCTTTT TTGGCAAATA TGAGTCATGA AATTCGCACG CCCATGAACG GTGTTATCGG CATGATCGAA TTGGTGTCGC AAACCAAGCT CGAAAAAGTG CAGCAAGATT ACATAGCAAC AGCAAAGCGC AGCGCTGACT CACTTATGGT GATCATTAAC GATATTCTCG ATTTTTCTAA AATAGAGGTG GGTGAGCTTA CCATTGAGTT AGTGGAATTT GATGTTGAGC AATTTTTTGC AGAATTGCTT CACGACCAAC AATTTCAAGC GAGTGAAAAA GGACTAAAAC TGTCGCTTAT AAAAGAAGAA TTGCAACACA CCAAAGTGGT TGGTGATCCC TATCGAATTA GGCAAATTGT CAATAACCTA TTGTCTAATG CGATCAAGTT TACCCAGTCA GGCCATATAC AAGTGCGTTA TAGCTTGACG AGTTCAAGTG ACAACTTGGA GTTGCACTGC GCTGTGACAG ACACAGGCAT AGGCGTGAGT AATGAGGCTT TGCCTTATCT CTTTGATTCA TTCTCTCAAG CTGATACATC AACAACGAGA AAGTTTGGTG GTACCGGGCT TGGTTTATCA ATTACAAAAC AGCTTTGCAA TTTGATGGGC GGAGACATAA AAGTGCAGAG TCAATTAGGT AAAGGCTCAA CCTTCGAATT CTCTGTCAAA CTTGCTTTTT CACAATGTTC AAACACCGAG CTAGACAAGC CTAGCGCAGC CGTAACATTT CCAAACGTAC AAGTTTTGTT GGTTGAAGAC AATTTTATTA ATCAAGAGGT TATGTTGGCA ATTCTGCAAG GGTTAGCAGT AAGAGTGTAC ATCGCCAATG ATGGGCTTGA GGCAATCTCC ACCTTGAGTC GTTGCCAAAA AACACGGTTC GATCTCATTC TTATGGATTG CCAAATGCCA AACCTTGATG GTTACGAAAC CACTAAACGC ATTCGCGCGG GTGAAGCGGG CGACATCTTT AAAGACGTTC CCATCGCTGC GCTAACGGCG AACGTGCTAG ATAGCGAACG GTTAAAATGC TTCGAATCAG GAATGAACGA GTATTTGACT AAGCCTGTCG ATTTTGACGC ACTAAAATCG ATTTTGTACA AATATCAACA CGCTAATCTC GAACAGTAA
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Protein sequence | MNQERLEAKQ IDSNTSLLRP VAYFFGFLYA VLTVAHFFLL EEPFKWILFL AALATAVINT AVGFRANDID PPRKEVVLLL LIFLASANSF LHLWLSQAPE QTTNIFVTVI ASGIVLSHRA LWCSAVLFNW IGWIVISNVL QMALIQHFFF AMAMSTLLSW FAHLARKNLV EKQQELERER DIALKHEKEA KAATEAKSAF LANMSHEIRT PMNGVIGMIE LVSQTKLEKV QQDYIATAKR SADSLMVIIN DILDFSKIEV GELTIELVEF DVEQFFAELL HDQQFQASEK GLKLSLIKEE LQHTKVVGDP YRIRQIVNNL LSNAIKFTQS GHIQVRYSLT SSSDNLELHC AVTDTGIGVS NEALPYLFDS FSQADTSTTR KFGGTGLGLS ITKQLCNLMG GDIKVQSQLG KGSTFEFSVK LAFSQCSNTE LDKPSAAVTF PNVQVLLVED NFINQEVMLA ILQGLAVRVY IANDGLEAIS TLSRCQKTRF DLILMDCQMP NLDGYETTKR IRAGEAGDIF KDVPIAALTA NVLDSERLKC FESGMNEYLT KPVDFDALKS ILYKYQHANL EQ
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