Gene Patl_2534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2534 
Symbol 
ID4174289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3071525 
End bp3074110 
Gene Length2586 bp 
Protein Length861 aa 
Translation table11 
GC content48% 
IMG OID638055551 
Productnitrite reductase (NAD(P)H), large subunit 
Protein accessionYP_662104 
Protein GI109898849 
COG category[C] Energy production and conversion 
COG ID[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID[TIGR02374] nitrite reductase [NAD(P)H], large subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGCAA ATACAGTCAA TATAGTCGTG GTAGGAAACG GAATGGTGGG CCACCATTTT 
GTTGAGCAAA TCACTAACCA CGGCAAAACC GACCCTTCTA TTACTTATAA AGTCACTGTG
TTATCAGCTG AGCCAAGACT CGCTTACGAC CGAGTGCATT TGTCGGAATA TTTCTCAGGC
AAGACAGCGG ACGATCTCGC GTTAACCACG CCAGCACACT ATGAAGCATT AGGTGTTGAT
TTTCACCTTG ATGCCGCAGT GGTCGATATT GACAAGCTAG GTAAGTTTGT TAAAACCAAA
TCCGGTCAGG TTTTCGCTTA CGACAAACTC ATCATGGCCA CTGGCTCTTA TCCGTTTGTG
CCACCAATTG AGGGGAACGA TCAACCTCAT TGCTTGGTGT ACCGCACCAT TGAAGATTTA
GAGGATATCA GCGCTTCAGC TAAAGTGAGC AAAACCGGTG TGGTTGTGGG GGGCGGCTTA
TTGGGTTTAG AAGCGGCGAA CGCATTGCGA GAGGCTGGTC TTGAAACTCA CGTTGTGGAG
TTTGCTCCGC AATTAATGGC GGTTCAAGTC GACACAGGCG GCGGTCGTCT ATTAAAAGAC
AAGATTGAAG CCTTAGGCGT GCAAGTTCAC ACCCAAAAAG CCACACAGCG TATTGAGGCG
GGTCAAACAA GTCGTTATCG CATGTGTTTT GCCGATGGGG ATTTTTTAGA GACCGACATG
ATCCTGTTCT CAGCAGGTAT TCGGCCACAG GATACGCTAG CACGCCAATA TGAGATTAAA
ATCGGCGAAC GCGGCGGTAT TGTGGTTGAT AACCACTGTT TAACGTCCGA GCCAGATATT
TATGCTATTG GCGAATGTGC CTTATGGAAT AACTTTATTT TTGGCTTAGT TGCCCCAGGC
TACACCATGG CGCGCGCTGC AGCGAGTCAC ATCACGGGTG GCGATGTAGA ATTTTTAGGC
GCAGATATGA GCACCAAGCT CAAACTCATG GGCGTTGAAG TGGGCTCTAT TGGTGATGCA
CATGCTCGCA TACCTGGTGC GCAAACCTAC ATTTATGAAA ATCAGCCTGA TGGCGTGTAT
AAAAAAATGG TGGTTAACCA TGAGCAAAGT GTGCTGCTTG GCGCCGTTTT GGTCGGAGAC
ACCAGTGACT ACGACACGCT TCTACAATAT GCGTTAAATG GCATCGATTT ACCTGAACAC
CCTGAAAGCT TGATTTTGCC TGCCTCAGGT GATGCGCCAG CAGGTGGCTT AGGCGCAGAC
GCGCTGCCTG AAACGGCGAC CATTTGCTCA TGTCACAACG TATCAAAAGG CGACATTATT
GCTGCTTTTG ATGGCGGAGC CTGCGATTTA GCCAGTGTTA AATCATGCAC TAAAGCCAGC
ACTGGTTGCG GTGGGTGTTC GGCGTTACTG AAAACCGTGG TCGACAGTGA ATTGGGCAAA
CGCGGCGTGG AAGTGAAAAA AGACATCTGT GAGCATTTTG CTTATTCGCG CCAAGAGCTT
TATCACATGG TTAAAGTCGG CAAAATTCAA AGCTTTGACG AGTTGATTGA AAAACACGGT
CACGGTTTAG GCTGTGAAAT TTGTAAGCCT GCTGTGGGCT CAATTATGGC CTCGGTGTGG
AATGACTTCG TGTTAGAAAA GCCTCACGTA GCCTTACAAG ACACCAATGA TACTTATTTA
GGCAATATGC AGAAAAACGG GACCTACTCG GTCGTGCCAC GTATTGCCGG CGGTGAAATT
ACCCCAGACA AACTGATTGT ATTGGGTCAA GTTGCGAAAA AATACAACTT GTATACCAAG
GTCACAGGTG GCCAACGTAT CGATTTGTTC GGCGCGCGAG TCGAACAACT TCCGCCTATT
TGGGAAGCCC TTATTGCTGC CGGTTTTGAA ACCGGTCATG CCTATGCGAA ATCACTGCGT
ACCGTTAAGT CTTGTGTAGG CAGTACTTGG TGTCGTTTCG GTGTGCAAGA TTCTGTGGGT
CAGGCTATCG ATCTGGAGAA CCGTTATAAA GGTCTACGTG CGCCGCACAA AATAAAATTT
GGTGTGTCAG GTTGCACCCG CGAGTGCGCA GAAGCACAGA GTAAAGACAT AGGGGTTATT
GCTACTGAAA ACGGCTGGAA CCTATATGTA TGTGGTAACG GCGGCATGAA ACCTCGCCAT
GCGGATTTGT TTGCTACTGA TTTAGATGAC GCCACCTTAG TTAAATATAT TGACCGCGTG
TTGATGTTTT ACGTGGCAAC TGCGGATCGT TTACAGCGCA CCTCAGTATG GTTAGAGAAT
CTAGAAGGCG GGTTAGCGTA TTTGCAAGAT GTGGTGATCA ACGACTCCCT AGGCTTAGGC
GAAGAGCTCG AGCAACAAAT GCAACACATC AAAGATACTT ACCAATGTGA GTGGAAAACA
GCCATTGAAG ATGAGTCTTC ACGTAAACGT TTTCGTCAAT TCGTCAACAG CGAACAGAGC
GATAAAAATG TCGTGTTTGT ACAAGAGCGC GCGCAAATTC GACCCGCTAC GGAAGCGGAA
CTAGAGACCC TTGCTAAATC CGGCAAAGGT ACCGAGCAAA TTATCGATGT TGTTGAGTTG
GCGTAA
 
Protein sequence
MSANTVNIVV VGNGMVGHHF VEQITNHGKT DPSITYKVTV LSAEPRLAYD RVHLSEYFSG 
KTADDLALTT PAHYEALGVD FHLDAAVVDI DKLGKFVKTK SGQVFAYDKL IMATGSYPFV
PPIEGNDQPH CLVYRTIEDL EDISASAKVS KTGVVVGGGL LGLEAANALR EAGLETHVVE
FAPQLMAVQV DTGGGRLLKD KIEALGVQVH TQKATQRIEA GQTSRYRMCF ADGDFLETDM
ILFSAGIRPQ DTLARQYEIK IGERGGIVVD NHCLTSEPDI YAIGECALWN NFIFGLVAPG
YTMARAAASH ITGGDVEFLG ADMSTKLKLM GVEVGSIGDA HARIPGAQTY IYENQPDGVY
KKMVVNHEQS VLLGAVLVGD TSDYDTLLQY ALNGIDLPEH PESLILPASG DAPAGGLGAD
ALPETATICS CHNVSKGDII AAFDGGACDL ASVKSCTKAS TGCGGCSALL KTVVDSELGK
RGVEVKKDIC EHFAYSRQEL YHMVKVGKIQ SFDELIEKHG HGLGCEICKP AVGSIMASVW
NDFVLEKPHV ALQDTNDTYL GNMQKNGTYS VVPRIAGGEI TPDKLIVLGQ VAKKYNLYTK
VTGGQRIDLF GARVEQLPPI WEALIAAGFE TGHAYAKSLR TVKSCVGSTW CRFGVQDSVG
QAIDLENRYK GLRAPHKIKF GVSGCTRECA EAQSKDIGVI ATENGWNLYV CGNGGMKPRH
ADLFATDLDD ATLVKYIDRV LMFYVATADR LQRTSVWLEN LEGGLAYLQD VVINDSLGLG
EELEQQMQHI KDTYQCEWKT AIEDESSRKR FRQFVNSEQS DKNVVFVQER AQIRPATEAE
LETLAKSGKG TEQIIDVVEL A