Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2456 |
Symbol | |
ID | 4174210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2984605 |
End bp | 2985903 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638055472 |
Product | seryl-tRNA synthetase |
Protein accession | YP_662026 |
Protein GI | 109898771 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0172] Seryl-tRNA synthetase |
TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00287072 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAGATG CTAAGTATTT ACGTAACGAT ATAAACATTG CGGCGCAAAA ACTCGAAAAA CGAGGTTACA CCCTTGATGT TGCTCAGTTC ACAGCACTAG AGGAAAAGCG CAAATCTTTA CAGATGCGCA CTCAAGAACT ACAAAATGAA CGCAATGTAC GCTCCAAGTC TATCGGTAAA GCGAAAGCAT CAGGTCAAGA TATTGAGCCT TTGCTTGCAC AAGTCGGCCA ACTTGGTGAT GAGCTTAATG CGGCCAAAGC CGAACTGACA GGCTTGCTAG ATGAAATTCA GACGCTGACT TTGAATATTC CTAACTTGCC TGACGACAGT GTGCCTGAAG GCAAAGATGA AGACGAGAAT GTAGAAGTGT CTCGTTGGGG CACGCCTCGG GAGTTTGATT TTGAAGTCAA AGATCACGTT GATTTAGGTG CTGGTGTCGC CAACGGTTTA GATTTTGAAA CCGCCACTAA GTTAACCGGC TCTCGTTTTG TGGTGATGCG TGGCCAAATA GCGCGTTTAA ACCGAGCCAT TGCTCAGTTC ATGCTTGATT TACACACAGA GCAGCATGGT TATCAAGAAA TGTACGTGCC GTATTTAGTG AACGAAGAAA GCATGTTAGG TACAGGTCAA TTTCCTAAGT TTGTAGGGGA TGCTTTTCAC ACCAAACCCG CAACCGAAGA AGGTCAAGGC TTGTCCTTGA TACCCACGTC AGAAGTGCCG TTAACCAATA TTGCACGTGA CTGTATTTTT GCAGCCAATG AATTACCGAT TAAAATGACG GCGCATACTC CTTGCTTTAG AAGTGAAGCG GGGTCATATG GTCGTGATAC TCGTGGTCTT ATTCGTCAGC ATCAATTCGA TAAAGTGGAG ATGGTGCAAT TGGTCGAAGC GGACAAATCA TTCGAAGCTC TAGACGAATT AACTGGCAAC GCTGAAAAAG TACTTCAGTT GCTTGAATTG CCCTACCGTA AGATGTTGTT GTGTACCGGC GATATGGGCT TTGGTGCATG CAAAACATTT GATTTAGAAG TGTGGTTACC CGCACAAGAT ACCTATCGTG AAATTTCGTC TTGCTCAAAC ATGCTTGATT TCCAAGCGCG TCGTATGCAA GCACGTTACC GCGACCCGCA AACGAATAAA ACCGAGTTGC TACATACGCT AAATGGTTCA GGGTTGGCAG TAGGACGCAC GCTAGTGGCC ATTTTGGAAA ACTACCAGCA AGCCGATGGC AGCATTACCA TTCCTGAAGT GCTTCAGCCT TATATGAATG GTGTAACTGT GATTGGTGCC GTTAAATAG
|
Protein sequence | MLDAKYLRND INIAAQKLEK RGYTLDVAQF TALEEKRKSL QMRTQELQNE RNVRSKSIGK AKASGQDIEP LLAQVGQLGD ELNAAKAELT GLLDEIQTLT LNIPNLPDDS VPEGKDEDEN VEVSRWGTPR EFDFEVKDHV DLGAGVANGL DFETATKLTG SRFVVMRGQI ARLNRAIAQF MLDLHTEQHG YQEMYVPYLV NEESMLGTGQ FPKFVGDAFH TKPATEEGQG LSLIPTSEVP LTNIARDCIF AANELPIKMT AHTPCFRSEA GSYGRDTRGL IRQHQFDKVE MVQLVEADKS FEALDELTGN AEKVLQLLEL PYRKMLLCTG DMGFGACKTF DLEVWLPAQD TYREISSCSN MLDFQARRMQ ARYRDPQTNK TELLHTLNGS GLAVGRTLVA ILENYQQADG SITIPEVLQP YMNGVTVIGA VK
|
| |