| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2379 |
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| Symbol | mnmA |
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| ID | 4174127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2893484 |
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| End bp | 2894674 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055390 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_661949 |
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| Protein GI | 109898694 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.246032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGGTT ATTTGCTAGA ATTCGCCACC ATTTTTACTG AGACTTTACT ATTTATCATG
CCTTATATTC ATTCCCTTAG TGCTACCGAG TTAGCCAGTA ATAGCCAGAA AAAGGTTATT
GTTGGTATGT CAGGTGGTGT CGATTCTTCT GTTTCAGCCT ATATCTTGCT GCAGCAAGGC
TATCAAGTTG AAGGCCTTTT CATGAAGAAT TGGGAAGAAG ACGACAATGA TGAATATTGC
GCAGCGGCTG ACGATCTAAA AGACGCTCAA GCAGTTGCAG ATAAGCTCGG CATAGTATTG
CATCAAATTA ACTTTGCGGC AGAGTACTGG GACAACGTGT TTGAATATTT CCTTGAGGAA
TACAAATCAG GGCGCACGCC GAATCCGGAT ATCATGTGCA ACAAAGAAAT TAAGTTTAAA
GCGTTTCTTG AATTCGCCGC AGAAGAACTT GAAGCCGATT ACATCGCGAC TGGACATTAT
GTGCGCCGCC GTGAAGTGGA TGGCCATTGG CAAATGCTTC GCGGTATGGA TGACAACAAA
GACCAAAGCT ACTTTTTGTA TACCTTAGGC GAACAGCATG TTGGTCAGAC GTTATTCCCA
ATTGGTGATA TAGAAAAACC ACAAGTACGC GAAATTGCTC AAGAACAAGG GCTTATCACC
CACGATAAAA AAGACAGCAC CGGCATTTGC TTTATTGGTG AGCGTAAATT CACTGATTTT
CTATCCCAGT ACCTCCCTGC GCAGCCCGGC GTTATCGAAA CGCCAGAAGG CCAAGAAATT
GGCCAGCATC AGGGGCTGAT GTATCACACC TTGGGTCAAC GCAAAGGGCT AATGATAGGT
GGCATGAAAG AGTTCGGTGA CGATCCATGG TACGTGGTTG ACAAAGACAT GGCGCGTAAC
GTTTTGATTG TTGGACAAGG TGCAGACCAC CCTCGCCTTT ACTCTAACGG TTTAATCGCC
AATCAATTGC ACTGGGTCGA CCGAACGGGA CCTACCTCGC CAATGAAATG CAGTGTTAAG
ACACGTTATC GCCAGGAAGA CATTGCCTGC ACACTAACAC CAGAACCTGA CGGCAACGTG
CGTGTTATGT TCGATGAGCC ACAAAAAGCA GTGACTCCTG GGCAATCGGC CGTGTTTTAC
TTAAATGAAG TCTGCTTAGG TGGCGGGATA ATAGAGAGCT ATATTCGTTA A
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| Protein sequence | MRGYLLEFAT IFTETLLFIM PYIHSLSATE LASNSQKKVI VGMSGGVDSS VSAYILLQQG
YQVEGLFMKN WEEDDNDEYC AAADDLKDAQ AVADKLGIVL HQINFAAEYW DNVFEYFLEE
YKSGRTPNPD IMCNKEIKFK AFLEFAAEEL EADYIATGHY VRRREVDGHW QMLRGMDDNK
DQSYFLYTLG EQHVGQTLFP IGDIEKPQVR EIAQEQGLIT HDKKDSTGIC FIGERKFTDF
LSQYLPAQPG VIETPEGQEI GQHQGLMYHT LGQRKGLMIG GMKEFGDDPW YVVDKDMARN
VLIVGQGADH PRLYSNGLIA NQLHWVDRTG PTSPMKCSVK TRYRQEDIAC TLTPEPDGNV
RVMFDEPQKA VTPGQSAVFY LNEVCLGGGI IESYIR
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