Gene Patl_2367 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2367 
Symbol 
ID4172524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2881294 
End bp2883156 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content45% 
IMG OID638055378 
Productsignal peptide peptidase SppA, 67K type 
Protein accessionYP_661937 
Protein GI109898682 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACCG ATAAAAGTTG GACCAAGGCG CTATTTGGCG GCATCTGGTT AGTACTCAAT 
TTTAGCCGTA AGTTATTCTT TAATCTTATC TTTCTCGTTA TTGCCATAGG CATAATCTCG
TTATTTTTTA GGGACAACGG GCAAATAGGT GTGAAACAAG ATTCAGCACT AGTGCTGAAT
ATCAAGGGTG ACATCGTTAT TCAGAAGCAC GCCATTGACC CTTTCGAAGC GTTTATGCAA
GAAGCACTGG GTCAAGCAAA CGAAAAACCT GAGGTTTTGT TACAAGATAT ATTGCTCACC
TTGGATAACG CTAAGCAAGA CAGACGAATT AAAGCACTCG TACTCGACTT GCACGAACTC
AGCGGCGCAG GTCTTGACAA GCTTGAACAG GTTGCACAAG CAATAGACGA TTTTAAACTC
AGTGAAAAAC CCGTTTACGC CATCGGTGAC TACTACACTC AAGAGCAATA TTACATTGCC
AGTCATGCTG ACCACGTTTA CATGAACCCC ATGGGATGGA TGTTATTTGA AGGGTATGGT
CGTTTCGGCA TGTATTACAA ATCAGCCCTA GAGAAAATCA AAGCAACCAC TCACGTATTC
AAAGTCGGTA CTTACAAGTC AGCGGTTGAA CCCCTGCTTC GCGACGACAT GTCACAACCC
GCTAAAGAAG CCAACAAGGC ATGGTTAAAC GGTATGTGGT CACAATACAA AAACAGCGTT
GCTGAAGCCA GAGGGCTGTC TACCGATAAC TTCGACGAAA AAGTTGATGA GTTTATGGTT
AAGTTTGAAG ACGCAAATGG CGATTTCGCC CAGTATGCCT TAGACAACGG CTGGGTAGAC
GGTTTAAAAA CACGAGAACA AGTACTGCAA GAGCTTGTGT CGGTCGTGGG CAAAGATGAA
GACGCCAAAC TCGGTTATAC CAATATCACC TTTAAACATT ACTTACACAT TGTTAACCCA
CCCCTTCCCC ATTTAAATAC AGGTATTGAT AAAGTCGGCG TCGTGGTTGC CAAAGGAACG
ATTTTAAACG GCGAGCAAAA ACCCGGTACC GTTGGGGGTG ATAGCACCGC AGAATTACTA
CGCAAAGCGC GTTTAGACGA CAGTATAAAA TCGGTAGTTT TATATGTGGA TTCACCTGGG
GGTAGCGCAT TTGCTTCTGA GATCATTCGA CAAGAAATTG AAAACCTCAA GGCAGCGGGT
AAACCAGTAG TTGCACTCAT GAGTACCTAT GCTGCATCAG GTGGCTATTG GATTTCAGCC
AGTGCCGATG AGATTTGGGC TGCACCGAGT ACGATAACCG GCTCAATCGG TATATTCGGT
ATGTTCGTTA GTTTTGAAAA CACACTGGAT TACCTTGGAG TGCATACCGA TGGTGTGGGC
ACAACTGACT TCGCAGGCAT GGGGATTACT CGCGGTATTG ACCCGAAAAT GGGTCAAGTA
TTGCAGCGCA GTATTGAGCA TGGCTACGAT CAATTTATAT CTTTGGTGGC TGAGGAACGT
CACATGAGCA AGGAATCGGT GGACAACATA GCGCAAGGTC GTGTGTGGAT TGGTGAGACC
GCTTTGAAAT TAAACTTGGT CGACCACCTC GGCTATATTG ATGACGCAGT CTCTGCGGCG
GCAGCCCGCG CTAATTTATC AGAGTATGAC GTCACCTATG TAGAGCGCTC TTTAAATAGC
AGTGAGTTAT TTTGGAAAGA GTTATTCTCA AATGCCTCTG TTGTGTTAGC GAGGACCCAG
TTTGCTCAAA GTGACAGTAA GCTAATGAGC CTGATCAACA AAGTAACAGC CGATTTCGAT
AATGTAGCAA AACTTAATGA TCCTCGGGGC GTTTACGCTT TTTGCCTAAC CTGCGATATT
TAG
 
Protein sequence
MSTDKSWTKA LFGGIWLVLN FSRKLFFNLI FLVIAIGIIS LFFRDNGQIG VKQDSALVLN 
IKGDIVIQKH AIDPFEAFMQ EALGQANEKP EVLLQDILLT LDNAKQDRRI KALVLDLHEL
SGAGLDKLEQ VAQAIDDFKL SEKPVYAIGD YYTQEQYYIA SHADHVYMNP MGWMLFEGYG
RFGMYYKSAL EKIKATTHVF KVGTYKSAVE PLLRDDMSQP AKEANKAWLN GMWSQYKNSV
AEARGLSTDN FDEKVDEFMV KFEDANGDFA QYALDNGWVD GLKTREQVLQ ELVSVVGKDE
DAKLGYTNIT FKHYLHIVNP PLPHLNTGID KVGVVVAKGT ILNGEQKPGT VGGDSTAELL
RKARLDDSIK SVVLYVDSPG GSAFASEIIR QEIENLKAAG KPVVALMSTY AASGGYWISA
SADEIWAAPS TITGSIGIFG MFVSFENTLD YLGVHTDGVG TTDFAGMGIT RGIDPKMGQV
LQRSIEHGYD QFISLVAEER HMSKESVDNI AQGRVWIGET ALKLNLVDHL GYIDDAVSAA
AARANLSEYD VTYVERSLNS SELFWKELFS NASVVLARTQ FAQSDSKLMS LINKVTADFD
NVAKLNDPRG VYAFCLTCDI