| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2338 |
|---|
| Symbol | |
|---|
| ID | 4172492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2843349 |
|---|
| End bp | 2845868 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055347 |
|---|
| Product | Alpha-glucosidase |
|---|
| Protein accession | YP_661909 |
|---|
| Protein GI | 109898654 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.185932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTGC TGCAATGCAT TAGCAATGAG CACATTAAAG AGAATTCGCA CCTACTTATG
ATAAAAATAC ACATTTCAAC TGGACGAAAA ATAATGATGC GGTTATTTGG ACTTAGCCTG
ATTTTATTGG CATTTACGGC GGCAAGTAGT GAGTATCAAT CACACGAATT GAATGGCCAA
GTACTGCATA TTCAAACTGA TGAAGGGCAA CTTAGCATTA CGGCACTGGC GAGTGATTCT
TTTGAAGTCT TTTATCAACC CAAAGGCATT AAACAACTCC CATCATTTGC GATCGATGGG
GTCGCAAAGC AAACAGAATT GACGATATCA GATGATGCAT CACGCCTTAC GCTAAGCGCA
CCTGGTATTC GTGCACAAAT AGATAAATCG CCCCTGCGGA TCCGCTATTT TCGTGATGAC
AAACTACTGT TAGCTGAGCA ACAAGGCTTG TTCATTGACG CTGACAAGCG AGGTTTTAGT
TTCGATTTGC AAGAAAATGA AAAGTTACTT GGTGGGGGTG AGCGCATAGT GGGGATGGAT
CGTCGCGGTC AGCGCTTTCC TCTTTATAAC AAAGCGCATT ACGGCTACAC CACTGAGTCA
AATCAGATGT ATTTCGGTTT ATCCGCTGTT ATGTCGAGTA ATAAGTATGT ATTGATATTC
GACAACTCTG CCCGCGGGGA AATGGATTTA GGTGCTAGCA ATAGCGATGA AATGCGCTTT
GAAGCGATAG GCGGACGTAC CAGTTACATT GTCGTTGCAG GAAAAACCTA CCCATCGTTA
ATTGAAAATT TCGTCACTGT GACGGGGAAG CAGCCTTTGC CGCCTAGATG GGCATTAGGC
AGTTTCGCCT CGCGCTTTGG CTATCGTAGT GAGCAAGAAG TGCGAGATAC GGTAAAACAA
TACCAAGAAT CCGGATTTCC ATTGGATGCA CTCGTGCTCG ACCTATATTG GTTCGGAGCG
GATATCAAAG GCCATATGGG TAATTTGAGT TGGGACGAAA AGACCTTTCC TACGCCAGTC
AAGATGATCA GTGATCTGCG TAAAGAAGGT GTAAAAACAG TCGTGATAAC TGAGCCTTTT
ATTCTGTCTT CGTCTAAAAA CTGGCAAGAG GCAGTCACGC ACAATGCCTT GGTAAAAGAT
CCTGAAGGTC ATCCTTATCA ATTCGATTTT TACTTTGGCA ATACCGGTCT AATTGATGTG
TTCGATAACG ACGCCCGCGA TTGGTTTAAC CAAACCTACG CAGCGTTGTA CAAACAGGGT
GTAGCGGGTT GGTGGGGAGA TTTAGGTGAG CCAGAGGTGC ACCCAGCAGA TGCTCAGCAT
AACCTTAATG GAATGTTGGC AACCGGTGAC GAGGTGCACA ATGCATACGG TCATAAGTGG
GCGGAACAAG TTTATCAACA TCAGGTGTCG TTAGCGCCGA ACACCAGACC CTTTATCATG
ATGCGCTCAG GTTTTGTTGG CTCACAGCGC TACGGCATGA TCCCATGGAC AGGTGATGTC
AGTCGCTCTT GGGATGGCTT GAAACCGCAA GTTGAATTAT CACTGCAAAT GGGCTTGCTA
GGCTTGGGGT ACACTCACTC TGATTTAGGC GGATTTGCAG GAGGCGACGT GTTCGATCCG
CAAATGTATA TTCGCTGGTT GCAATACGGT ATTTTTCAAC CTGTTTTTAG ACCCCACGCA
CAAGACAATA TTGCCCCAGA ACCGGTGTTT CATAAAGGCA AAACCAAGGA TATTCTTCGT
ACCTATGTAG AGTTGCGTTA CGCCATGATG CCGTACAATT ACTCTTTGGC ATTTGAGAAC
AGTTTGACCG GTATGCCCTT GATGCGTCCG ATGTTTTTTG AAAACGAAAA TGACATATCG
CTCATCGATG TAAAGGATCA ATATTTTTGG GGAGATGCGT TATTGGTTAA ACCTATCACT
CAAGCAAATC AGAACGAGGT CAGCATCACC TTACCCAAAG GAGCTTGGTT CAATTTTTGG
AGTGACGAGC GCTATGAGGG TGATCAAACG ATAACCATGC CTACTGACAT AAAGTTGCTG
CCTGTCTTGG CTAGAGGTGG GGCTATTATC CCTATGACGT TACCCGTACT GAGTACGGAT
GATTATTCAA CCAAAACACT CGATTTACAT TATTACGCGG ATAAAAGCGC GTTAACGTCC
ACGTCCGTTA TGTACAACGA TGACGGTAAA AACCCTCACG CTATTCGCGA TAAGGCATTT
GAAACGCTGA CGTTCACAGC CAAGCGTCAA GTTGACGAGA GCAAACCCGA TTCTTTAGTG
TTTGAACTTA AACGCACAGG AGAATTCAAA GGCATGCCGG GAAGCAGGAT GGTGTCACTT
TGGATCCATA ATTGGCCGCA AGATATTAAT CAAGTGCTGG TGGGTGACAA ACAATTACCA
CAGATTAAAG ACAAAACGAC GTTTTTAAAC GCAAACCGTG GGACCCGTTG GGACAGTGAA
ACCAACACGC TTGAGGTGAA ATTTGGATGG GACGCAGATA CTTCAGTTCA GGTGTTTTAA
|
|---|
| Protein sequence | MLLLQCISNE HIKENSHLLM IKIHISTGRK IMMRLFGLSL ILLAFTAASS EYQSHELNGQ
VLHIQTDEGQ LSITALASDS FEVFYQPKGI KQLPSFAIDG VAKQTELTIS DDASRLTLSA
PGIRAQIDKS PLRIRYFRDD KLLLAEQQGL FIDADKRGFS FDLQENEKLL GGGERIVGMD
RRGQRFPLYN KAHYGYTTES NQMYFGLSAV MSSNKYVLIF DNSARGEMDL GASNSDEMRF
EAIGGRTSYI VVAGKTYPSL IENFVTVTGK QPLPPRWALG SFASRFGYRS EQEVRDTVKQ
YQESGFPLDA LVLDLYWFGA DIKGHMGNLS WDEKTFPTPV KMISDLRKEG VKTVVITEPF
ILSSSKNWQE AVTHNALVKD PEGHPYQFDF YFGNTGLIDV FDNDARDWFN QTYAALYKQG
VAGWWGDLGE PEVHPADAQH NLNGMLATGD EVHNAYGHKW AEQVYQHQVS LAPNTRPFIM
MRSGFVGSQR YGMIPWTGDV SRSWDGLKPQ VELSLQMGLL GLGYTHSDLG GFAGGDVFDP
QMYIRWLQYG IFQPVFRPHA QDNIAPEPVF HKGKTKDILR TYVELRYAMM PYNYSLAFEN
SLTGMPLMRP MFFENENDIS LIDVKDQYFW GDALLVKPIT QANQNEVSIT LPKGAWFNFW
SDERYEGDQT ITMPTDIKLL PVLARGGAII PMTLPVLSTD DYSTKTLDLH YYADKSALTS
TSVMYNDDGK NPHAIRDKAF ETLTFTAKRQ VDESKPDSLV FELKRTGEFK GMPGSRMVSL
WIHNWPQDIN QVLVGDKQLP QIKDKTTFLN ANRGTRWDSE TNTLEVKFGW DADTSVQVF
|
|---|
| |