| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2331 |
|---|
| Symbol | |
|---|
| ID | 4172485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2837508 |
|---|
| End bp | 2838431 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055340 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_661902 |
|---|
| Protein GI | 109898647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGT TGCATAGTAA AATTGATTTA AATTTATTTC TTATTCTTGT CGCGGTTTAC
CAAGAAGGCT CAATTACTGG AGCAGGTAAA CGACTCCATC TCAGTCAACC CGCGGTGAGT
CATGCACTTT CAAGGCTCAG AGATAAATAT CAGGATCCGC TATTTGTGCG CCACGGACGC
AAAATGATCG CCACTCAACT GTGCCAAACG ATTATGCCCA GGGTACTTAG CTCGGTGGCA
GAGCTAGAGT CCACTTTGCA CGACATTGGC GACTTTGACG TCCATCAATA TCAGCGCGAA
ATGAAGTTTG GTTTTAGGGA TATCCTCGAG TCTATATTCT TTCCTGAATT GGCCACTGAT
CTGATGGCTA ACACTCCAAA TATTACAGTG CACAGCCGCC AAGTGAGCCG TCTAGACATG
GAGGCTGCTC TTGAAAGCCA AGCTCTCGAC ATCGTAATCG ATGTGCTTAC ACCAACCAGT
AATGATATTC ATCATACATT GATTTGTGAT GAACATTTTT CGTTAATTTG CCGCAAAGGC
CACCCCATAT TATCTGATAT GAGCTTGGCT AATTACATTA AGGCCGAGCA TGCGTTAGTG
ACCTTTAAAG ATTCTGCGGT CAATACCGTA GATATGGCAC TGGCTAAACA TGCTGTTGCG
CGCAAGTTTG CTTTAAAATG TGAACATTAC TTTGCTGCAA CCAGTGTCAT CAGTCGCTGT
GACATGTTGC TCACCATGCC CAACGCCTAT GCGCGATTAC TAAAACAACA AATGCCCGTT
GAGGTCGTTC CTTTGCCGTT CGAGGTACCC ATTTTGCCTG TACACATGTA CTGGCATAAG
CAAGCGGAGC ACGACCCACT GAATAGTTGG ATGCGGCAGA AGCTACTGGC TATTGCTAAA
CGCGTTATTC CCCCGCCATC TTAG
|
|---|
| Protein sequence | MNMLHSKIDL NLFLILVAVY QEGSITGAGK RLHLSQPAVS HALSRLRDKY QDPLFVRHGR
KMIATQLCQT IMPRVLSSVA ELESTLHDIG DFDVHQYQRE MKFGFRDILE SIFFPELATD
LMANTPNITV HSRQVSRLDM EAALESQALD IVIDVLTPTS NDIHHTLICD EHFSLICRKG
HPILSDMSLA NYIKAEHALV TFKDSAVNTV DMALAKHAVA RKFALKCEHY FAATSVISRC
DMLLTMPNAY ARLLKQQMPV EVVPLPFEVP ILPVHMYWHK QAEHDPLNSW MRQKLLAIAK
RVIPPPS
|
|---|
| |