| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2328 |
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| Symbol | |
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| ID | 4172482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2832309 |
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| End bp | 2834012 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055337 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_661899 |
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| Protein GI | 109898644 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCTA ATCAACCCTC TTGCTTTACG ACGTTTTCTG CTGATGTTTC CGCAGATATT
TTGTCCTCTA CGTTACCTGA AAAATTTACG TTTCCATTTT ACTACCAGCC TCACGCGTTG
TGTCAGCTTG CAGCAAAAGA GCTGCAACAG CATATACTGA CGCAAACGGA TTGGTATCAT
AATTTCGGTT TAACTGACGA CCCTGCATTG ATTATTGGCA AAATGTTCGG AGTATTGTTG
GTCAAAAACA GTGTCGGCAA GCTGGGCTAT TTAAGTGCTT TTTCCGGCAA GTTAGCTGAG
CAAAATCACT TACCCAAGTT TGTACCTCCT GTGTTTGATA TGCTGGCAAG CGATAGTTTT
TTTCATGATG AGCAGCACAT GATCAAGCAG ATAACAGCCG AGCTTGATGT TATTTTGCAA
GACTCTGCAT ACCAGCTTGC CAAAGACAAC TTTGCCCATA CCCAAGCGAA TTGCCTTGCT
GAAATTGAAC AAAAGCGTTT ACGTGTCGTT GCTAATCGCG CTAAACGAAA AGCGCTACGA
GATAATACCA CTGCTGAGCC AGAAAACGCT GAGCTTGAGT CGCTGTTTAA GTCCTTAGCA
GCCCAAAGCA TTGAAGAAAA GCTTGAATTT ACCCAACACA AAAAAGATCT ATTGAGCACG
ATAGCCTCGG CTAAAGACTC CCTCGATAAA TTTGAACGAC AAATACAATC CCTAAAGAAA
CGACGTAAAA CACTTTCAGC ACAGCTACAG CAGCGTCTTT TCGAGCAGTA CCAATTTTTA
AATGCGCTTG GGGATAACAA ATCGTTGGCC GCAATATTCA GTGACACCGT TATGCGCACA
CCTCCTGCTG GTGCGGGTGA ATGTGCCGCC CCCAAACTGC TGCATTATGC TTATAGCCAT
AATTTAACGC CTGTTGCCAT GGCGGAGTTT TGGTGGGGGG CTTCGCCTAA ATCACAAGTG
CGCAAACACA AGCAGTTTTA CCCTGCATGT ATTGGAAAAT GCCAACCCAT TTTGAATCAC
ATGCTTGAGG GGTTAACAGT AGAAGAAAAT CAGCTATTGA AAAACGCAGC TGACGGCGAG
CAAATAGAGA TCATTTACCA AGACGATGAA ATGCTTATCA TCAATAAACC GGCCCAGTTG
TTATCTGTAC CGGGTAAGCA TATCAGTGAT TCTGTTTATA CCCGCATCAA AGCAATGCTG
CCCCATGCCA CAGGATCATT AATAGTGCAT CGCTTGGATA TGTCCACTTC AGGTTTGATG
GTCATTGCGT TAAGCACTGC TGCCCACAAG GTGCTGCAAA AACAGTTTAT CAGCCGGCAA
GTCAGCAAAC GCTATATGGC CCTTATTGAT GGCATTGTAA CTGATGAAAA CGGCGTTATT
ACTTTGCCGC TAGCAGGTGA TTTTTATGAC AGGCCCAGAC AATGCGTATG TGAAAAAACC
GGCAAACCAG CCCACACCAC GTGGCAAGTG ATTGAACGGC GCCACAAAAC ACAGCAAACT
AAGGTATATC TGCACCCCAG AACAGGACGA ACACACCAAT TACGTGTTCA TTGCGCCCAC
GAGCGCGGGT TAAACATGCC GATTGTGGGG GACGATTTGT ACGGTACTCA AGCCCGTCGT
TTACATTTAC ATGCGCAATA TTTGGGCTTG TTTCACCCGG TATCCAATCA ATGGCTTGAG
TTTAGCTGCA ACCCTGATTT TTAA
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| Protein sequence | MTSNQPSCFT TFSADVSADI LSSTLPEKFT FPFYYQPHAL CQLAAKELQQ HILTQTDWYH
NFGLTDDPAL IIGKMFGVLL VKNSVGKLGY LSAFSGKLAE QNHLPKFVPP VFDMLASDSF
FHDEQHMIKQ ITAELDVILQ DSAYQLAKDN FAHTQANCLA EIEQKRLRVV ANRAKRKALR
DNTTAEPENA ELESLFKSLA AQSIEEKLEF TQHKKDLLST IASAKDSLDK FERQIQSLKK
RRKTLSAQLQ QRLFEQYQFL NALGDNKSLA AIFSDTVMRT PPAGAGECAA PKLLHYAYSH
NLTPVAMAEF WWGASPKSQV RKHKQFYPAC IGKCQPILNH MLEGLTVEEN QLLKNAADGE
QIEIIYQDDE MLIINKPAQL LSVPGKHISD SVYTRIKAML PHATGSLIVH RLDMSTSGLM
VIALSTAAHK VLQKQFISRQ VSKRYMALID GIVTDENGVI TLPLAGDFYD RPRQCVCEKT
GKPAHTTWQV IERRHKTQQT KVYLHPRTGR THQLRVHCAH ERGLNMPIVG DDLYGTQARR
LHLHAQYLGL FHPVSNQWLE FSCNPDF
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