| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2324 |
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| Symbol | |
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| ID | 4172478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2828023 |
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| End bp | 2828823 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638055333 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_661895 |
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| Protein GI | 109898640 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000556027 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACT ATCTTACGAA TCCAGCCAGC CTGTTTGATT TAAAAGGAAA GGTCGCGCTT
GTTACGGGTG CAACTGGTGC ATTTGGTCAA GTTGCCGCTC GCGTGATCGG CAATTCTGGG
TGCAACCTGT TACTAACAGG TGGCAACAAA GAGGCGTTGG AATCACTGGC AGAATCCCTA
AGGCAAGAAG GAATACATGT TGCCACACGT AACACTCGTC CAAGCACCGA ACAAGAATGC
GATGCCATGG TCGAACAAGC GGTTTCTACC TATGGCAAGC TCGATATTCT AGTGGTGGGC
TCTGGTGTAA ATGACGTAGA TCCCATTCAA GATTTAAGCA CCGAGCGTTG GCAAAAAGTG
ATGGACGCCA ACGTGCGGGA TTCTTGGCTG TTATGCAAAG CCGCGGGTAA ACAGTTCATG
AGCCAGGGCG GCGGCGGCAA AGTCGTATTG GTTTCATCTG CGCGAGGTAA GCTTGGACAT
CCTGCGGGTT ATTCAGCGTA CTGCCCATCT AAGTCGGCGG TTGACGGCTT AACCAGAGCA
TTGGGCTGCG AATGGGGCAA ACACAACATT ACCGTGAATG CTATCGCCCC CACCGTATTT
CGCTCGAACC TAACAGCCTG GATGTTTGAA GACAACGAGC CAGGCAAAAG TACCCGAGAA
AATATTCTCG CTCGCATTCC TATGGGCCGC TTGGGTGAGC CAGAAGACCT TGCCGGTCCC
CTGCTCTTTC TTGCATCAGA CGCATCGAGC TTTCATACCG GACACGTAAT TTACGCAGAC
GGCGGTTACT CAGCAGGTTA G
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| Protein sequence | MNNYLTNPAS LFDLKGKVAL VTGATGAFGQ VAARVIGNSG CNLLLTGGNK EALESLAESL
RQEGIHVATR NTRPSTEQEC DAMVEQAVST YGKLDILVVG SGVNDVDPIQ DLSTERWQKV
MDANVRDSWL LCKAAGKQFM SQGGGGKVVL VSSARGKLGH PAGYSAYCPS KSAVDGLTRA
LGCEWGKHNI TVNAIAPTVF RSNLTAWMFE DNEPGKSTRE NILARIPMGR LGEPEDLAGP
LLFLASDASS FHTGHVIYAD GGYSAG
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