| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2290 |
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| Symbol | |
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| ID | 4172444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2791889 |
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| End bp | 2792536 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055299 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_661861 |
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| Protein GI | 109898606 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGAAA CACACAGTGA GCAACCGATA CGACTATTGC TGGTAGATGA CCACCCTATG
GTACAAGGGG GACTTAGCGC CTGTTTGTCG TTTTATGATG ACATTGAAAT TGTCGGCATG
ACCCATGATG GCAAAGATGC ACTGGAAAAG GCGCTCGATT TAAAACCTGA TGTGATCTTA
ATGGACATCA GTATGCCCTC TATGAACGGC ATCGATGCCA CTGAAATTAT CACTGACAGT
CTCGATGACA CCAAAGTGTT GATATTTAGC ATGCACGATA GCCCCGAGTT TGTGACAAGT
TCGATTCAAG CGGGCGCATC TGGCTATATT TTAAAAGACA CGACATCGGA AGAGGTGTAT
TACGCAATTA AGGCCGTCGC TAAGGGACAA ACCCACTTCA GCAGTTCAAT TGCAAAAATG
CTGATTGATA AGCCAATCAA AGACACCAGT CAAAAGCTCA CTACCCGGGA GCAGCTCATT
TTAACCCATG TTGCCCAAGG TAAATCGAGT AAAGAAATCG CGCGCATTCT TAATATCAGT
TTTAGAACCG TTGAGGCGCA TAGGCGCAAT ATGAAGAGCA AATTAAATAT TGAGTCCCTG
GCTGAGCTTA TCTGTTACGC GGTTGACCAT GGGCTGGTAG AAAAGTGA
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| Protein sequence | MTETHSEQPI RLLLVDDHPM VQGGLSACLS FYDDIEIVGM THDGKDALEK ALDLKPDVIL
MDISMPSMNG IDATEIITDS LDDTKVLIFS MHDSPEFVTS SIQAGASGYI LKDTTSEEVY
YAIKAVAKGQ THFSSSIAKM LIDKPIKDTS QKLTTREQLI LTHVAQGKSS KEIARILNIS
FRTVEAHRRN MKSKLNIESL AELICYAVDH GLVEK
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