| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2275 |
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| Symbol | |
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| ID | 4172429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2767476 |
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| End bp | 2769815 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055284 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661846 |
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| Protein GI | 109898591 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00175316 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGAA AAAAGACGTG TCAAATAGCG CCATTGAGCC TTCGCTCACC TAAGGTTAAC
ACTAATAAAA CCTTGTTAGC ATTAAGCGTT CCCGGCATGT TAATGAGCCC GTTTGCTATG
GCTCAAGAAG ACGAACCCAT TGTATTGGAC ACCATGCAAA TTGAAGAGCG TACCGTTGAT
ACCAACCCTT ACGCGCAAGC GGGTGCTCCC TATAAAGCGC AAGTTTCAGG CGACTCACGC
CATGTAAAAG AGCTGGCCGA TACACCGCAA ACCATCAGTG TACTGACGCA AACTCAAATT
CAAGAATCTG GAAGAACTGA CTTAAAAGAC ATCCTCGCGG CACAACCTGG TATTACCCTA
GGTACAGGTG AAAACGGAAA TGCATTTGGT GATCGTTACA TTATCCGCGG CCATGAAGCA
CGCAGTGACG TGTTTGTTGA TGGTTTACGT GATCCAGGCA TGACAACCCG TGAAAGTTTT
GCAACAGAGC AAGTTGAAAT CACGAAAGGC CCAAGCTCTA CGTTTGCTGG TCGTGGTTCA
ACAGGTGGTG CGGTTAACAG CATTACTAAG CAAGCGAGCA CGGAATATGA CTTCTCTAAG
CTCGAAGCAG GTTTAGGCAC AGAGGATTAC CGCCGTATCG CCCTTGATAG CAACAAACGC
ATCAATGACG ACCTAGCAGT ACGCGCCAAT ATTTTGCATT CGTATAAAGA AATTCCAGAT
CGTGGCCCTG CAGATCAAGA ACGAAATGGT CTTGCGCTTT CTGTTGATTA CAAAGCAACA
GATAAGTTGA AACTTACCGC TGATTATTAC TACTTAAAAG CAGAAGATAC CCCTGACTTG
GGTACTTATA TTGTTGCGGG CGGCGGTAAG CCAGTGGCGG ATTTGCCTGT TTACTCTCAA
GATGGACAAG ACTTTCTTGA GTCCGAAATT AATACCTTTA CCTTGCGCGC ACAATACGAA
ATAGACAGTG ATACGCGTGT TGAAAACTTA ATGCGTTACG GGACGACCGA TAACGGTTAT
GTGACGACAG GCGCCCGCGG CACCAACCGT GACGCTAGCG ATCCAGACGC ACCAAGCGCA
GCAACCGTTA GCCTTAGCAC ACACCAAGGT TGGCAAGAGG TGGATTACTT CGCGGATCAG
TTAAACGTAT ATTTAACCCG TGATCTTGGC GGTTTAAAGC ATAATTTTGT AGTGAGCGCA
GAGTACAGTG CTCTTGATGT AGATAATGGC GTTTATAATG TGACTAATAC TGGTGATACC
AACTGTGTGA CATCTGGTCG CGGTGGTGCA TCAGCTGGTT TCTGTATCGT AGATGCAAAC
GGTAACTATA TTGATAACAT CAACAGTGTT ACGGGTCGCA GCATTGAAAA AGGTGCACAA
GACTCTGATT ACTCTATTGA TACTGTATCA GTCTCAATCA TGGACACGGT TGATATTAAC
GAGTTTTGGT CAGTATTTGC TGGCGTACGT GCTGATAGCT TCGACTACGA CAATGTCGTG
ACCAGTCGAG GTGTTGCTAC GGCTTACGAC TATTCTGACA CGCTTTGGAA TGGTCATGTT
GGCGTGGTAT ACAACATCAA CGAAGATGCT AATGTTTACT TGACCTACAG CACATCAAGC
AACATCAACG GTGGCGAGTC TGACTTAGGT GGCAACTGTG GTTACGGCGG TATCTGTGGC
GACCCTCAAC AAGTAACAGA CAGTAAACCG GAAGACACCG AAAACTTCGA ATTAGGCACG
AAATGGAACG TATATAACGA TAAGTTGTTG CTAACCGCTG CTATTTTCCA AATCACCAAA
GACGACGTAA TGGAAAGCAT CGGTGACGAT GACTACGCCA GTATCGGTAC GCTAAACACG
GGCAAAAACC GCGTTAAAGG TGCTGAATTC TCAGTGGTAG GCAATATCAC CGAAGACTTA
AGCACTCAGT TTGGTGTGAC GTTTATGGAT GCCGAAGTGC TTGAGTCATT CGACACCGAC
AGTGTAGGCC TCACGTTGAG TAATTTTGCT GATAACAGTG CGTTTTGGCA GTTACGTTAT
CAAGCAAGCG ATGCTTTCTC GTTCGGTGGC ACTATGACCT ACTCAAGCGA GATGTACGCA
GGTCAGCCTG ACTCTGCAGC TGGTTATAAC ACTGGTATCG ATGATTACTC GTATAAAGTG
CCTAGCTACA CCTCGTTCGA TGTATTCGCG ACCTATGCCT TCAGTGAGCA GCTAAATCTT
CGTCTTAACG TTGCTAACGT GACAGATAAA GATTACTACT TAGCAGCATA CCGTAGTGGT
GCATTTACCT ATATTGGTGC AGCACGAAAC GCCAAGCTAA CGTTAACGTA CGAGTTTTAA
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| Protein sequence | MSRKKTCQIA PLSLRSPKVN TNKTLLALSV PGMLMSPFAM AQEDEPIVLD TMQIEERTVD
TNPYAQAGAP YKAQVSGDSR HVKELADTPQ TISVLTQTQI QESGRTDLKD ILAAQPGITL
GTGENGNAFG DRYIIRGHEA RSDVFVDGLR DPGMTTRESF ATEQVEITKG PSSTFAGRGS
TGGAVNSITK QASTEYDFSK LEAGLGTEDY RRIALDSNKR INDDLAVRAN ILHSYKEIPD
RGPADQERNG LALSVDYKAT DKLKLTADYY YLKAEDTPDL GTYIVAGGGK PVADLPVYSQ
DGQDFLESEI NTFTLRAQYE IDSDTRVENL MRYGTTDNGY VTTGARGTNR DASDPDAPSA
ATVSLSTHQG WQEVDYFADQ LNVYLTRDLG GLKHNFVVSA EYSALDVDNG VYNVTNTGDT
NCVTSGRGGA SAGFCIVDAN GNYIDNINSV TGRSIEKGAQ DSDYSIDTVS VSIMDTVDIN
EFWSVFAGVR ADSFDYDNVV TSRGVATAYD YSDTLWNGHV GVVYNINEDA NVYLTYSTSS
NINGGESDLG GNCGYGGICG DPQQVTDSKP EDTENFELGT KWNVYNDKLL LTAAIFQITK
DDVMESIGDD DYASIGTLNT GKNRVKGAEF SVVGNITEDL STQFGVTFMD AEVLESFDTD
SVGLTLSNFA DNSAFWQLRY QASDAFSFGG TMTYSSEMYA GQPDSAAGYN TGIDDYSYKV
PSYTSFDVFA TYAFSEQLNL RLNVANVTDK DYYLAAYRSG AFTYIGAARN AKLTLTYEF
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