Gene Patl_2258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2258 
Symbol 
ID4172412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2747216 
End bp2749342 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content45% 
IMG OID638055268 
ProductTonB-dependent receptor 
Protein accessionYP_661830 
Protein GI109898575 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCTTGC AAAAATCAGT AGCCCCTTTA GCGACGCTTT CTCTTGTACT ACAAAGTTCC 
TTCGTCGTTG GGCAACAATC ACCTGTTGAA GTCATCGTTG TTAGCGGCTC CCATCAAAAC
ACTGACATAA TGGCACTTAG CAGCAATGTT AATCTTATTG ATGAGCAAGA GATTGAGCGA
GTCAATGCTG TCCTCGCCAG CGACATACTC AATCGAGCCA GCGGCGTATA TGTGCAAGCT
AATAATGGTG TTGAAAACTT GCCTTCGCTA CGCTCGCCTA TCCTCACAGG CCCGGGCGCT
GGGGGGGCTT TTCTATTTAT GCAAGACGGC GTGGCGACAC GTGCTGCTGG GTTTGCCAAT
AACAATGGTT TAGCCGAGTT AAATTTGGCC CAAGCGGATG GCATCGAAGT TATCCAAGGC
CCAAATAGCG CAGTATATGG TTCTAACGCA GTGCACGGTG TTATCAATGT ATTGAGTCTC
ACGCCGAGCA ATGGCGCAGA CGTAGGCATC ACATTTGGCC CTAATGATAG AGTTCAGTTT
AACGGTGCAT TGGGTCACAT TGACGATCAA GGACCTGCAA ACCAAGGCAT CGGCCTGAAT
ATTCAGGTTG TTGACGATGG CGGTTATCAA AACGACAGCG GTTTTACCTC GAGTAAATTA
GGCTTACGTC ATGATTATCA GCGAGACCAA CTGACTATCC AAAGCTCACT GTCTGGTTTT
GATCTTGACC AAGACACTGC AGGTTTTATC GCCTCTGGTG ATAACGGTGA GGGTTGCTTT
AGCTCTAACT TCGCGCCCGA CAAATTATAT AAAGATCGCT CAGCAATGGA AAAAAACTGT
GATCCCGATG CGTATCGGCA ATGGTCTTCC ATTCGAGGCG CAACGCATAT TGCTTATCAA
GTTAACAACG ATGAATTGAT TAACGTTACA CCGTATTTTC GAAGTAACAG TATGGAATTT
CGCCAGCACT ACCTCCCCTC ACGCGCTATC GAAGAAAACA GTCACTTTAG CTTGGGTGTC
AATTCTGATT ACCAATGGCA AGTAAACCAA TCCGTCTCTC TTGTAGTTGG CATCGATATA
GACTGGACGC AAGGTGAACT GACGGAAACC CAAGAACTAG CAGACCGCTT TAGCTTCGGA
AAAGCAAGAC AACAAGGTGT GCATTTTGAC TATGAGGTCG ATTCATCGAC CCTTGCACCA
TATATCCAAG TCAATTGGCA ATATAACGAG GCGCTTGTCT TTACCACCAA TGTTAGATTC
GATAGCACAG AATATGACTA TGATAATTTA ATCGCGAATG GCACAACCAA GGCGGATGGC
ACATCTTGTA TCAACAATGA CGGTCAAGCT GTGAGTTGCT TGTATCAACG CCCAGAAGAT
CGCACTGACC GTTTCAATAA CACCAGTGCC AAAATAGGCG CTAATTACCG TGTAAGTGAT
AATATCTCTT TGTTTGCGAA TTGGTCTAAC GGGTTTCGAG CGCCTCAAAC GACGGATTTA
TATCGGCTCC AAAACCAACA AACCATAGGC ACTATTGATT CCGAAGAAAT TAACAGTATT
GAAGCTGGCA TAAGAGGTGC CTATCAAGTG TTAACGTTCC AAGGGGTCAT ATATCGAATG
CAGAAGGATA ACTTTTTCTT TCGTGATGAC GATGGTTTAA ATGTAACTGA TGGCGAAACA
AACCATAGCG GTGTTGAACT AACAGTTAGC ATAAACGTTT TAGATAACTT ACGTTTTTTG
GCCAACTATG CGTACGCAAA ACATGAGTAT GACTTTGATC GTTTAAGCAG TGGCGTTGTA
AATGGCAACG AAATCGATAC AGCCCCTCGT CAACAAGGCA ACGCCCGCTT AGAATGGCAG
CCCACGAATG CCACATCCCT AGCGTTAGAG TGGCAACACA TTGGCAGTTA CTTTCTTGAT
CCAGCAAATG AACATGAATA TGCCGGACAC GACTTGTTCA ATATACGGGC CCAATGGCAA
ATCAATAAGC AGATACGCCT TAATGCCAAG CTAGAAAATG TCTTCGATGG AGAATATGCC
AGCCGAGCGG ATTACGCGTT TGGCTCCTAC CGGTATTTCG GTGGACAGCC TCGCGCGATA
TATTTAGGCG CAAATTACGC TTTTTAG
 
Protein sequence
MLLQKSVAPL ATLSLVLQSS FVVGQQSPVE VIVVSGSHQN TDIMALSSNV NLIDEQEIER 
VNAVLASDIL NRASGVYVQA NNGVENLPSL RSPILTGPGA GGAFLFMQDG VATRAAGFAN
NNGLAELNLA QADGIEVIQG PNSAVYGSNA VHGVINVLSL TPSNGADVGI TFGPNDRVQF
NGALGHIDDQ GPANQGIGLN IQVVDDGGYQ NDSGFTSSKL GLRHDYQRDQ LTIQSSLSGF
DLDQDTAGFI ASGDNGEGCF SSNFAPDKLY KDRSAMEKNC DPDAYRQWSS IRGATHIAYQ
VNNDELINVT PYFRSNSMEF RQHYLPSRAI EENSHFSLGV NSDYQWQVNQ SVSLVVGIDI
DWTQGELTET QELADRFSFG KARQQGVHFD YEVDSSTLAP YIQVNWQYNE ALVFTTNVRF
DSTEYDYDNL IANGTTKADG TSCINNDGQA VSCLYQRPED RTDRFNNTSA KIGANYRVSD
NISLFANWSN GFRAPQTTDL YRLQNQQTIG TIDSEEINSI EAGIRGAYQV LTFQGVIYRM
QKDNFFFRDD DGLNVTDGET NHSGVELTVS INVLDNLRFL ANYAYAKHEY DFDRLSSGVV
NGNEIDTAPR QQGNARLEWQ PTNATSLALE WQHIGSYFLD PANEHEYAGH DLFNIRAQWQ
INKQIRLNAK LENVFDGEYA SRADYAFGSY RYFGGQPRAI YLGANYAF