Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2258 |
Symbol | |
ID | 4172412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2747216 |
End bp | 2749342 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638055268 |
Product | TonB-dependent receptor |
Protein accession | YP_661830 |
Protein GI | 109898575 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCTTGC AAAAATCAGT AGCCCCTTTA GCGACGCTTT CTCTTGTACT ACAAAGTTCC TTCGTCGTTG GGCAACAATC ACCTGTTGAA GTCATCGTTG TTAGCGGCTC CCATCAAAAC ACTGACATAA TGGCACTTAG CAGCAATGTT AATCTTATTG ATGAGCAAGA GATTGAGCGA GTCAATGCTG TCCTCGCCAG CGACATACTC AATCGAGCCA GCGGCGTATA TGTGCAAGCT AATAATGGTG TTGAAAACTT GCCTTCGCTA CGCTCGCCTA TCCTCACAGG CCCGGGCGCT GGGGGGGCTT TTCTATTTAT GCAAGACGGC GTGGCGACAC GTGCTGCTGG GTTTGCCAAT AACAATGGTT TAGCCGAGTT AAATTTGGCC CAAGCGGATG GCATCGAAGT TATCCAAGGC CCAAATAGCG CAGTATATGG TTCTAACGCA GTGCACGGTG TTATCAATGT ATTGAGTCTC ACGCCGAGCA ATGGCGCAGA CGTAGGCATC ACATTTGGCC CTAATGATAG AGTTCAGTTT AACGGTGCAT TGGGTCACAT TGACGATCAA GGACCTGCAA ACCAAGGCAT CGGCCTGAAT ATTCAGGTTG TTGACGATGG CGGTTATCAA AACGACAGCG GTTTTACCTC GAGTAAATTA GGCTTACGTC ATGATTATCA GCGAGACCAA CTGACTATCC AAAGCTCACT GTCTGGTTTT GATCTTGACC AAGACACTGC AGGTTTTATC GCCTCTGGTG ATAACGGTGA GGGTTGCTTT AGCTCTAACT TCGCGCCCGA CAAATTATAT AAAGATCGCT CAGCAATGGA AAAAAACTGT GATCCCGATG CGTATCGGCA ATGGTCTTCC ATTCGAGGCG CAACGCATAT TGCTTATCAA GTTAACAACG ATGAATTGAT TAACGTTACA CCGTATTTTC GAAGTAACAG TATGGAATTT CGCCAGCACT ACCTCCCCTC ACGCGCTATC GAAGAAAACA GTCACTTTAG CTTGGGTGTC AATTCTGATT ACCAATGGCA AGTAAACCAA TCCGTCTCTC TTGTAGTTGG CATCGATATA GACTGGACGC AAGGTGAACT GACGGAAACC CAAGAACTAG CAGACCGCTT TAGCTTCGGA AAAGCAAGAC AACAAGGTGT GCATTTTGAC TATGAGGTCG ATTCATCGAC CCTTGCACCA TATATCCAAG TCAATTGGCA ATATAACGAG GCGCTTGTCT TTACCACCAA TGTTAGATTC GATAGCACAG AATATGACTA TGATAATTTA ATCGCGAATG GCACAACCAA GGCGGATGGC ACATCTTGTA TCAACAATGA CGGTCAAGCT GTGAGTTGCT TGTATCAACG CCCAGAAGAT CGCACTGACC GTTTCAATAA CACCAGTGCC AAAATAGGCG CTAATTACCG TGTAAGTGAT AATATCTCTT TGTTTGCGAA TTGGTCTAAC GGGTTTCGAG CGCCTCAAAC GACGGATTTA TATCGGCTCC AAAACCAACA AACCATAGGC ACTATTGATT CCGAAGAAAT TAACAGTATT GAAGCTGGCA TAAGAGGTGC CTATCAAGTG TTAACGTTCC AAGGGGTCAT ATATCGAATG CAGAAGGATA ACTTTTTCTT TCGTGATGAC GATGGTTTAA ATGTAACTGA TGGCGAAACA AACCATAGCG GTGTTGAACT AACAGTTAGC ATAAACGTTT TAGATAACTT ACGTTTTTTG GCCAACTATG CGTACGCAAA ACATGAGTAT GACTTTGATC GTTTAAGCAG TGGCGTTGTA AATGGCAACG AAATCGATAC AGCCCCTCGT CAACAAGGCA ACGCCCGCTT AGAATGGCAG CCCACGAATG CCACATCCCT AGCGTTAGAG TGGCAACACA TTGGCAGTTA CTTTCTTGAT CCAGCAAATG AACATGAATA TGCCGGACAC GACTTGTTCA ATATACGGGC CCAATGGCAA ATCAATAAGC AGATACGCCT TAATGCCAAG CTAGAAAATG TCTTCGATGG AGAATATGCC AGCCGAGCGG ATTACGCGTT TGGCTCCTAC CGGTATTTCG GTGGACAGCC TCGCGCGATA TATTTAGGCG CAAATTACGC TTTTTAG
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Protein sequence | MLLQKSVAPL ATLSLVLQSS FVVGQQSPVE VIVVSGSHQN TDIMALSSNV NLIDEQEIER VNAVLASDIL NRASGVYVQA NNGVENLPSL RSPILTGPGA GGAFLFMQDG VATRAAGFAN NNGLAELNLA QADGIEVIQG PNSAVYGSNA VHGVINVLSL TPSNGADVGI TFGPNDRVQF NGALGHIDDQ GPANQGIGLN IQVVDDGGYQ NDSGFTSSKL GLRHDYQRDQ LTIQSSLSGF DLDQDTAGFI ASGDNGEGCF SSNFAPDKLY KDRSAMEKNC DPDAYRQWSS IRGATHIAYQ VNNDELINVT PYFRSNSMEF RQHYLPSRAI EENSHFSLGV NSDYQWQVNQ SVSLVVGIDI DWTQGELTET QELADRFSFG KARQQGVHFD YEVDSSTLAP YIQVNWQYNE ALVFTTNVRF DSTEYDYDNL IANGTTKADG TSCINNDGQA VSCLYQRPED RTDRFNNTSA KIGANYRVSD NISLFANWSN GFRAPQTTDL YRLQNQQTIG TIDSEEINSI EAGIRGAYQV LTFQGVIYRM QKDNFFFRDD DGLNVTDGET NHSGVELTVS INVLDNLRFL ANYAYAKHEY DFDRLSSGVV NGNEIDTAPR QQGNARLEWQ PTNATSLALE WQHIGSYFLD PANEHEYAGH DLFNIRAQWQ INKQIRLNAK LENVFDGEYA SRADYAFGSY RYFGGQPRAI YLGANYAF
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