Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2249 |
Symbol | |
ID | 4172403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2732348 |
End bp | 2735779 |
Gene Length | 3432 bp |
Protein Length | 1143 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055259 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_661821 |
Protein GI | 109898566 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG3300] MHYT domain (predicted integral membrane sensor domain) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.673162 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTTTC ATACCATTAT CAAAATTAAA GCTGGTGTTA CAGGGTTAAA AGTCGATACC TTAAGCATCT ATTCTGTCCT TTTTATCTGT CCGATATTTA TGTATGAAGC TGTAAAAACA ATGTTTGCGC CCGTAGACGA CAATTTACTG ATCGTAGGCG AATTTGACCT GATGTTGCTT ATTGTATCAG TCGGTTTGGC GATTTTTGCG TCATTCATGG CAATGCTCGT CGCATCTCAA AGTGCTTACA TGGAAAATGT TGTTAAAAGA AGGATCTTGT CCCTCGTAGC CAGTGTAGCC TTAGGCGGGG GAGTTTGGGC GATGCACTTC GTCGGTATGT TGGCGTTTTC TTTGTGCACA CCTATTGCCT ACAGTGCTGG CCTCACGGCT ACCTCAACTC TACCAAGTAT TTTAGCGTCT TGGGTTGCGC TGACGACCAT CACCCGTAAA ACAGTTTCTG TGAATCGTTT GCTGGTAAGC GGCATTCTGA TGGGGGCAGG TATCGGTACT ATGCACTATG TAGGCATGAG TGCGATGGAA ATGGCGCCAA AACTGCGTTA CGACCTGGGT ACGTTCGCGC TCTCTATAGT TTTTGCCGTG GTATTTTCAA TGCTCTCGCT ATGGATCCGC TTCGGGCTGA CCTTCATGGA TACTATGCGT TACGGTAAAG TTTATCGTAA CGTCATTTCC GCAATCGTTA TGGGGTTAGC TATCTCAGGC ATGCATTATA TAGGCATGGC AGCCGCACGA TTTGTTCGCC CCCCAGGTTT CGAATTTTCA AGTCAAAGCG CGTACATTTC TCAATATTTA GGCTTCACTG TGGCGCTTAT TACCATTGGG ATTATCGTGC TCGTACTGGC CTCAAACATG GTGCTTAAAT ATAAAGAGTT GACTGAGAAA GCACGAATAA ATGAAGCACG GTTGCGTGCA ACCATAAACA CGTCAGTGGA TGGGGTGTTA GGGTTTGACA GTAACGGCAT TGTAGACAGC GCCAATGACG CATTCTGCCA GTTAGTCGGT TGTCGTTCTG ACGACATCAT TGGACAAGAT GTGCGCGTGT TAATAAGAAA GGAGAATATC AACGAATTTA ATCAGTACCT TATCGATCGT ACTCAGGACA ATGGCCATGC TTTAGGTCGA GGAAGAGACG CTCTTATTAA GCACTTCGAT GGCAGTTTGA TCCCGATACG TTTAGCAATA GGTCATGTTC GGTTAAATAA AGAAAGTCAT TTCGTGGCAT TTATGTCCGA CTTGCGGTAT CGCATCGAAA TGGAGCGAGC ACTGCGCGAA CGCGAAGCAC AATTTCGCTC TTTGATCAGC AATATTCCAG GTATTGCTTA TCGCTGCAAG AATATGGAAA ACTGGCCCAT GGTGTTTATC AGTGACGCGG TTGAATCAAT AACAGGTTAT CCAGCGGAAG ATTACATCTC GCCTGATCCC AAGCGCCATT TTTATGAACA TGTTCACCCA GACGATATTG CGGATATTAC GCAAAAAGTA CTTCCCCATG GGGAATTTCA ACTGGAATAC CGTATATACA ATGCAAAGGG CGATATTCGT TGGTTGCTTG GTTATGGTAC ACATGTTGAT GACGAGGAGT CAGGGCAACG ATGGCTAGAT GGCTTTATCA TGGATATCAC CGAACGTAAG GAAATGGAAC AATCATTACT CTTAGCCAAG GACAAAGCTG AACAAGCTGC TTCTGCGAGG GCTGCTTTTC TAGCCAATAT GAGCCACGAG ATCCGTACCC CGATGAATGC GATCATCGGT TTCAGTGACA TCTTGTTAGA TGATGCAATT GAGCCTGACC AGAAAAAGCA CCTTACTACA ATAAATAAAT CTGCAAAGTC CTTGCTGCAC CTCTTGAACG ACATTTTAGA CAGCGCCAAA CTAGACAAAG GGAAATTTGA TTTAGAGATG CGCGACTTCT CATTAATAGA AGAAGTTGAC TCAGTTGTTT CAACGCTTTG GCTTGGTGCA AGCAACAAAA ATTTGTATCT GAATGTCAAT ATTGATCCAG CCGTGGAGAA TCAATTTCAC GGCGCTCCGG ACAGGATCCG GCAGGTTCTG ACTAATATTG TTGGCAACGC AATCAAGTTT ACCTTAGAGG GCGGAATTGA TATCAACATA GGCGTAAAAC CGAGCGGCTG TATTGACTTC TCGGTAAGTG ATACTGGTAT AGGGATGACG CCAGAGCAGC TAGCCTTGGT ATTTGATGCC TTTGGACAAG CCGATGCCAG TATGAGTAGG CGTTTTGGAG GCACTGGCCT TGGAACGACG ATCAGCAAAC AACTTGTTGA ACTCATGGGC GGTAAAATAT CGGCAACCAG TGAGTTTGGT AAAGGAAGCT GTTTCTCGTT TTCTTTGCCT CTCGCGCCGC CTAAATCTGA TGAGTCAATG GACGTGATTT ATCAGCGCTG TACTTTACCC CCTTTAACTA TGTTAATTGT TGATGATATT CAACAAAATA TCGACCTGCT GTCACTGTTA ATGAAGCGTC AAGGACATAC GGTTGTGACG GCTCGCGATG GTAAACAGGC ACTGCTTAGG ATGCGTAGCG AAAAGGTTGA CCTTGTATTG ATGGATATTC AGATGCCCAT CATGGATGGC CTCACATCTG CAAAAGAGCG GCGTAAACAA GAGCAGACTG AAAGTTTGCC CTATTTGCCG ATCATTGCCC TTACCGCCAG CGTATTAGCC GAGGACAAAC AAGCTGCTTT AGACGCAGGG ATGGATGGAT TTGCCAATAA GCCCGTTGAT ATAGAGCTTT TAAATGTAGA AATTGCCCAA GCTTTGGGAG TCGATTTAAG CTGTGAAATT GAAGACCCTA CTGAGGTCAA TTCTAATGAT TCACATGTAA TAAATGAACG CCAGGGGATC AGTTTGTGGG GCGATAAAAG CGTTTGGCTC AAAGAAGTTA GCGCGTTCAT GGAAAACAAC CAAAGTAATA TTGTTGCACT AGGGCGCATG CAAGTGGCTC CTAATTGGCA GGAGATACAA ACCAAGCTGC ATACTTTTAA AGGGCTGACT GGCAATCTAG CGCTAACCCA GCTGAGCGAT TTAATCAGTG ATGCAGAGCG CTGCGCAATG ATAAAAAACA CACAAGATCT TGGTAGTGTG TTTAAGGATA TCGATAGCGC CTTCGATGCA ATAAATAGCT ACTTGGCCAC CCAGCAAGTT GGAGCGGATA CAGACTCTCA GCTAGACAAC CATGAAACAC TCAGTAAAAA AGAGCTTGTC GATATTATTG AAACGCTTAT AACTTCAGCG CAAAACAATG AATACGACGA AGAGACAGCC CAAGCACTGG TTGACGGTGC AAATAAGACT ATATTGGATA GATGCAAAAG CATACAAAAC GCATTAGATG ATTTTGAATT TGAACAAGCT GTTCATCAAT TACAACAGCT TAGTATGTCG AGTCTGTCGT AA
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Protein sequence | MVFHTIIKIK AGVTGLKVDT LSIYSVLFIC PIFMYEAVKT MFAPVDDNLL IVGEFDLMLL IVSVGLAIFA SFMAMLVASQ SAYMENVVKR RILSLVASVA LGGGVWAMHF VGMLAFSLCT PIAYSAGLTA TSTLPSILAS WVALTTITRK TVSVNRLLVS GILMGAGIGT MHYVGMSAME MAPKLRYDLG TFALSIVFAV VFSMLSLWIR FGLTFMDTMR YGKVYRNVIS AIVMGLAISG MHYIGMAAAR FVRPPGFEFS SQSAYISQYL GFTVALITIG IIVLVLASNM VLKYKELTEK ARINEARLRA TINTSVDGVL GFDSNGIVDS ANDAFCQLVG CRSDDIIGQD VRVLIRKENI NEFNQYLIDR TQDNGHALGR GRDALIKHFD GSLIPIRLAI GHVRLNKESH FVAFMSDLRY RIEMERALRE REAQFRSLIS NIPGIAYRCK NMENWPMVFI SDAVESITGY PAEDYISPDP KRHFYEHVHP DDIADITQKV LPHGEFQLEY RIYNAKGDIR WLLGYGTHVD DEESGQRWLD GFIMDITERK EMEQSLLLAK DKAEQAASAR AAFLANMSHE IRTPMNAIIG FSDILLDDAI EPDQKKHLTT INKSAKSLLH LLNDILDSAK LDKGKFDLEM RDFSLIEEVD SVVSTLWLGA SNKNLYLNVN IDPAVENQFH GAPDRIRQVL TNIVGNAIKF TLEGGIDINI GVKPSGCIDF SVSDTGIGMT PEQLALVFDA FGQADASMSR RFGGTGLGTT ISKQLVELMG GKISATSEFG KGSCFSFSLP LAPPKSDESM DVIYQRCTLP PLTMLIVDDI QQNIDLLSLL MKRQGHTVVT ARDGKQALLR MRSEKVDLVL MDIQMPIMDG LTSAKERRKQ EQTESLPYLP IIALTASVLA EDKQAALDAG MDGFANKPVD IELLNVEIAQ ALGVDLSCEI EDPTEVNSND SHVINERQGI SLWGDKSVWL KEVSAFMENN QSNIVALGRM QVAPNWQEIQ TKLHTFKGLT GNLALTQLSD LISDAERCAM IKNTQDLGSV FKDIDSAFDA INSYLATQQV GADTDSQLDN HETLSKKELV DIIETLITSA QNNEYDEETA QALVDGANKT ILDRCKSIQN ALDDFEFEQA VHQLQQLSMS SLS
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