Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2229 |
Symbol | |
ID | 4172381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2696765 |
End bp | 2697982 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638055237 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_661801 |
Protein GI | 109898546 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGATTA AAACGATACC GTTTATCAGT TTTAACGCAC TCACGATACT TACATTACTT ATGAGCACTG CACTGCTTTC GGCTTGTGGC GGCGCAGATG CCACCAGCAC TGAGCCCGAA CAAGCATTGG TCATTTCAGT GCCCGTAGAA GCAGGCGCAC TGCATATCGG CGAGATTTCC TCTAATTACA CCACCACAGC GGTACTTGAA GCCAAAGAAG AAGCCTACGT AGTCGCCCGC GCTTCGGGCA TCATCGAACA CATTTACGTA GAAGAAGGTG ATTACGTCAC CAAAGGTCAA GTACTTGCGC AATTAGAGCC AGAGCGTTAT CGCTTAAACC TCGCACGGGC AAAAGCGGAT TTAATTGGCA TCGAAAAAGA GTTGGCAAAA ATAGACAAGG TGTATAACCA AAAGCTAGTG AGCGACGACA CCTACGATAA AATTAGCGCC CAATACGCAT CCACTAAGGC GACGTTATCG CTGGCGCAGT TAGACTTAAA AGAAGCCACT ATCGTGGCGC CTATTTCTGG TTATATTGCC GCACGTAACG CCAAAGTGGG TAATTTAACC GAATCATTTC AACGTGCTCA AATGTTCCAT ATCGTCGAAC AAAATGAATT ACATGGCGTT GTCTACTTAC CTGAAAAAGA ACTATCTCGG GTGCATAAAA ATCAAGCGGC AAAATTAACC TTAAGTGCAT TGCAAGACAG TACGGTCACT GCCTATGTTG AGCGCATCAG CCCAGTCATT GATGCCGCCA CTGGCACGTT TAAAGTGACG CTTCGTGTAC CAAATGATAA AAAATTGCTT AAAGCCGGTA TGTTCGCCCA TGTCAGTTTG AATTACGACA CCCACCAGCA CGCTACTCTT ATGCCTCGTA AAGCCATGCT CAGCATTGAT AATAAAGTCA ATGTGTTTGT TGTGAATGAC GGCCTTGCCC ACAAACAAGA AATTCAAGTG GGTTATCAAG AGGGTGACTA TGTAGAGATA CTCAGTGGCT TGAAGGGCAA CGAGCATGTG GTGATTACCG GTCATCAAAA TTTGAAAGAC CAAGCACCTG TAGAAGTGGT TAATGCCGAT TCACTTATGT TACAGGCTCG TTCACCTGTT GAAGAGCCAG TTTCTAGCAC TCAAAAGCCC ATTGAATTTA ACGGTGATGA CGCGGGCGAA GCCGCAGATA CAGACACAAC AGCCTCAAAC GCCGATCACA CTCGCTAA
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Protein sequence | MTIKTIPFIS FNALTILTLL MSTALLSACG GADATSTEPE QALVISVPVE AGALHIGEIS SNYTTTAVLE AKEEAYVVAR ASGIIEHIYV EEGDYVTKGQ VLAQLEPERY RLNLARAKAD LIGIEKELAK IDKVYNQKLV SDDTYDKISA QYASTKATLS LAQLDLKEAT IVAPISGYIA ARNAKVGNLT ESFQRAQMFH IVEQNELHGV VYLPEKELSR VHKNQAAKLT LSALQDSTVT AYVERISPVI DAATGTFKVT LRVPNDKKLL KAGMFAHVSL NYDTHQHATL MPRKAMLSID NKVNVFVVND GLAHKQEIQV GYQEGDYVEI LSGLKGNEHV VITGHQNLKD QAPVEVVNAD SLMLQARSPV EEPVSSTQKP IEFNGDDAGE AADTDTTASN ADHTR
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