Gene Patl_2206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2206 
Symbol 
ID4172358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2664143 
End bp2665576 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content44% 
IMG OID638055214 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_661778 
Protein GI109898523 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0163044 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTAAAA AACTTTTTAT TAAAACTTGG GGCTGTCAGA TGAACGAGTA TGACTCGCAG 
AAGATGGCTG ACTTATTGGA TTCAACCCAT GGATATCAAG TTGCTGACAC CGCGGAAGAA
GCCGACATCA TTTTACTCAA TACGTGTTCT ATCCGCGAAA AAGCCCAAGA GAAAGTGTTT
CATCAATTGG GACGCTGGAA AAACCTCAAA CAAGATAAGC CTGAATTGAT CATTGGTGTT
GGTGGCTGCG TGGCATCGCA AGAAGGTCAG GTGATTCGTC AACGTGCGCC ATTTGTAGAT
TTAGTGTTTG GTCCGCAAAC GCTGCACCGT TTGCCAGAAA TGATAAATCA GATCAAAGGT
GGTAGCTCCT CCGTTATTGA TATTAGCTTC CCTGAGATAG AAAAGTTTGA CCGCTTGCCA
GAACCCAAAG CGGAAGGCCC GACGGCCTTT GTTTCTATTA TGGAAGGTTG CTCAAAATAT
TGTACTTTCT GCGTGGTACC TTATACCCGG GGCGAAGAAG TCAGTCGTCC AGTCGATGAT
GTATTACTTG AAGTCGCACA GCTAGCAGAA CAAGGTGTAC GTGAAGTCAA TTTGTTAGGT
CAAAACGTGA ATGCGTTTCG TGGCCCACAT CATGATGGCG CGATTTGTAC CTTTGCTGAG
TTACTAGAAA TGGTTGCCTC AATCGATGGT ATTGACCGTA TTCGTTACAC CACATCACAT
CCCGTTGAGT TCACTGACGA TATCATTGAT GCTTACGCGA CCATTCCTGA ATTAGTTGAT
CATTTACACC TGCCTGTACA GTCAGGCTCA GATCGTGTCT TGAATTTAAT GAAGCGAGGC
CATACTGCAA TAGAGTACAA GTCGAAAATT CGTAAGCTTA GGAAGATTCG TCCTAACTTA
AGTATGTCAT CAGACTTTAT CATCGGCTTT CCAGGTGAAA CTGACGATGA TTTTGAAGCG
ACAATGGATT TGATTCAAGC AATGGATTTC GATTTGAGCT TTAGCTTTAT TTACAGTGCG
CGTCCGGGTA CGCCGGCAGC AGATTTACCC GACGATGTAT CTGAAACAAC GAAAAAAGAG
CGTTTACAGC TATTGCAAAA TCGCATCACC CAGCAAGCGT TGCGCATTGC TCGGAATATG
ATTGACAGTG AACAACGAGT ATTAGTAGAA GGCCCATCTA AAAAGAATCC GATGGAGCTT
TCTGGGCGTA CTGAAAACAA CCGAGTGGTT AACTTTGAAG GCACTCCGGA TATGATTGGC
GGCTTTGTAG ATGTAAAAAT CACAGATGTG TTTGCCAACT CATTGCGCGG AGATGTTCTA
CGCAAAGAAG CCGACATGAA TTTACGTATC AATGTGGCGC CTCAGGCCAT ATTGGCCAAG
CAAACAAATA AAACCGATGC CTTAGGCGTC GCTCAGTTTG TGCCAGCACA TTGA
 
Protein sequence
MTKKLFIKTW GCQMNEYDSQ KMADLLDSTH GYQVADTAEE ADIILLNTCS IREKAQEKVF 
HQLGRWKNLK QDKPELIIGV GGCVASQEGQ VIRQRAPFVD LVFGPQTLHR LPEMINQIKG
GSSSVIDISF PEIEKFDRLP EPKAEGPTAF VSIMEGCSKY CTFCVVPYTR GEEVSRPVDD
VLLEVAQLAE QGVREVNLLG QNVNAFRGPH HDGAICTFAE LLEMVASIDG IDRIRYTTSH
PVEFTDDIID AYATIPELVD HLHLPVQSGS DRVLNLMKRG HTAIEYKSKI RKLRKIRPNL
SMSSDFIIGF PGETDDDFEA TMDLIQAMDF DLSFSFIYSA RPGTPAADLP DDVSETTKKE
RLQLLQNRIT QQALRIARNM IDSEQRVLVE GPSKKNPMEL SGRTENNRVV NFEGTPDMIG
GFVDVKITDV FANSLRGDVL RKEADMNLRI NVAPQAILAK QTNKTDALGV AQFVPAH