| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2181 |
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| Symbol | |
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| ID | 4172333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2634108 |
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| End bp | 2635142 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638055189 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_661753 |
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| Protein GI | 109898498 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0119902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAATTTT TGTACGAATA CGGCTTATTT ATAGCCAAAG CAGTGACCAT AGTAATCGCT
ATATTGTTAG TCGTTGGAGG CGTAGTTGGG TTGATCAGTA AACAGAAGCA ACCCAAGGGA
AACCTTGAAA TTGACTCAAT TTCAGAGCGC TTAGATGACA TTAAAGACAA TGTTAATCAT
CTCATTTGCA GCAAAGACGA GTTAAAGAAG AAAAACAAAG AGCAGAAAAA AGCGGACAAA
GCCGCTAAAA AAGAGACAAA AAACAAAGGC GACGATGATG AAAAGGGTAA TCTTTATGTG
ATTGACTTTA ACGGCTCGAT GGATGCCCAT GAAGTCGATA ACTTAAGGGA AGAAGTAACC
GCCATCATTT GCATTGCGAA GCCTAAAGAT GAAGTGCTCG TTCGACTTGA AAGCGGTGGC
GGGGTTGTGC ATGGCTATGG TCTTGCAGCA TCGCAATTAC AACGCCTAAA AGACAAAGAT
ATACCGTTAA CCGTTGCTGT TGATAAAGTG GCGGCAAGTG GTGGTTATAT GATGGCCTGT
GTTGCAGATA ACGTATTAGC CGCAAAATTC GCCATTATTG GCTCTATTGG GGTTATTGCC
CAAATTCCTA ACTTTAATAA ATTATTAAAG AAAAACGATA TTGAGTTTGA GCAACACACA
GCCGGGCAAT TCAAACGCAC GTTGACCATG TTTGGCGAAA ACAGTGATGA AGGACGTGAA
AAATTCCGTG ATGAATTAGA AGACGTGCAT CAAATGTTCA AAGGCTTTGT GCAAGAGCAC
AGACCTGCGC TGGCGATTGA TACTGTCGCT ACGGGTGAAT ATTGGTACGG CAGTAAAGCG
TTAGATCTTG GATTGGTTGA TACCATACAA ACATCTGATG ACTTTTTGCT CGACGCGAAC
AACGTTAAGA AAATTTATTC AGTGAAATAT TCGGTCAAAA AGAATCTAGC TGAAAAATTT
GGCATATCAG TCACCAAAGG CGTGGTGCAA TCGTTGATTA AGGTATTGAG TAAGACCCAA
GTTATTGCCA AATAG
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| Protein sequence | MEFLYEYGLF IAKAVTIVIA ILLVVGGVVG LISKQKQPKG NLEIDSISER LDDIKDNVNH
LICSKDELKK KNKEQKKADK AAKKETKNKG DDDEKGNLYV IDFNGSMDAH EVDNLREEVT
AIICIAKPKD EVLVRLESGG GVVHGYGLAA SQLQRLKDKD IPLTVAVDKV AASGGYMMAC
VADNVLAAKF AIIGSIGVIA QIPNFNKLLK KNDIEFEQHT AGQFKRTLTM FGENSDEGRE
KFRDELEDVH QMFKGFVQEH RPALAIDTVA TGEYWYGSKA LDLGLVDTIQ TSDDFLLDAN
NVKKIYSVKY SVKKNLAEKF GISVTKGVVQ SLIKVLSKTQ VIAK
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