Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2175 |
Symbol | |
ID | 4172327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2626295 |
End bp | 2627167 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638055183 |
Product | 3-hydroxyisobutyrate dehydrogenase |
Protein accession | YP_661747 |
Protein GI | 109898492 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00502561 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACAA AAATAGCGTT TATTGGACTC GGTGTAATGG GCTTTCCAAT GGCTGGACAT CTTGCTAAAG CCGGTTATGA AGTCACGGTA TACAATCGTA CTCAATCAAA AGCACAGGAG TGGTTAGCGC GTTTTGATGG TCTATCACAA AGTACCCCAG CCAAAGCGGC GAAAGACGCT GACATCATAT TTATATGTGT TGGTAATGAC GATGATTTGC GTTCGGTAGT TTGTGGAGAA ACCGGGATTT TAGCAACCGC AAAAGAGGGG GCTATTATCG TAGATCATAC AACGGCTTCA GCGGATGTGG CGCGTGAAAT TGCAACATTA TCGGCACACC AAGGGGTGGC ATTTTTAGAT GCCCCCGTTT CTGGCGGGCA AGCTGGGGCT GAAAACGGAC AATTAACAAT CATGCTAGGT GGTGACGAAT CGAGTTTTAC TCAAGTGGAG CCTATCATTG CATCCTATGC TAAATTCAGT CGATTACTCG GTTCAATAGG CAGTGGTCAA CTTGCAAAAA TGATGAATCA AATTTGTATC GCTGGTGTGG TACAAGGGTT AGCTGAAGCG CTTCACTTTG GTCAAAATGC CGGGCTCGAT TGTGAGTCGG TCATCGATGT TATCTCTCAA GGAGCAGCTC AATCATGGCA GATGGATAAT CGCTCAAAAA CCATGTTAGC GGGCGAGTAC GACTTTGGTT TCGCAGTAGA TTGGATGCGT AAGGATTTAG GGATTGCTCT TGATGAGTCT AGAAAAAACG GAAGCACACT GCCGCTGACA GCGCTAGTTG ACCAGTTTTA TGCTGACGTG CAACGCCAGG GCGGGAGTCG GTTTGATACT TCGAGTTTAC TGACTCGTTT GAAAAGCCAT TGA
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Protein sequence | MTTKIAFIGL GVMGFPMAGH LAKAGYEVTV YNRTQSKAQE WLARFDGLSQ STPAKAAKDA DIIFICVGND DDLRSVVCGE TGILATAKEG AIIVDHTTAS ADVAREIATL SAHQGVAFLD APVSGGQAGA ENGQLTIMLG GDESSFTQVE PIIASYAKFS RLLGSIGSGQ LAKMMNQICI AGVVQGLAEA LHFGQNAGLD CESVIDVISQ GAAQSWQMDN RSKTMLAGEY DFGFAVDWMR KDLGIALDES RKNGSTLPLT ALVDQFYADV QRQGGSRFDT SSLLTRLKSH
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