Gene Patl_2175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2175 
Symbol 
ID4172327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2626295 
End bp2627167 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content46% 
IMG OID638055183 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_661747 
Protein GI109898492 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00502561 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAACAA AAATAGCGTT TATTGGACTC GGTGTAATGG GCTTTCCAAT GGCTGGACAT 
CTTGCTAAAG CCGGTTATGA AGTCACGGTA TACAATCGTA CTCAATCAAA AGCACAGGAG
TGGTTAGCGC GTTTTGATGG TCTATCACAA AGTACCCCAG CCAAAGCGGC GAAAGACGCT
GACATCATAT TTATATGTGT TGGTAATGAC GATGATTTGC GTTCGGTAGT TTGTGGAGAA
ACCGGGATTT TAGCAACCGC AAAAGAGGGG GCTATTATCG TAGATCATAC AACGGCTTCA
GCGGATGTGG CGCGTGAAAT TGCAACATTA TCGGCACACC AAGGGGTGGC ATTTTTAGAT
GCCCCCGTTT CTGGCGGGCA AGCTGGGGCT GAAAACGGAC AATTAACAAT CATGCTAGGT
GGTGACGAAT CGAGTTTTAC TCAAGTGGAG CCTATCATTG CATCCTATGC TAAATTCAGT
CGATTACTCG GTTCAATAGG CAGTGGTCAA CTTGCAAAAA TGATGAATCA AATTTGTATC
GCTGGTGTGG TACAAGGGTT AGCTGAAGCG CTTCACTTTG GTCAAAATGC CGGGCTCGAT
TGTGAGTCGG TCATCGATGT TATCTCTCAA GGAGCAGCTC AATCATGGCA GATGGATAAT
CGCTCAAAAA CCATGTTAGC GGGCGAGTAC GACTTTGGTT TCGCAGTAGA TTGGATGCGT
AAGGATTTAG GGATTGCTCT TGATGAGTCT AGAAAAAACG GAAGCACACT GCCGCTGACA
GCGCTAGTTG ACCAGTTTTA TGCTGACGTG CAACGCCAGG GCGGGAGTCG GTTTGATACT
TCGAGTTTAC TGACTCGTTT GAAAAGCCAT TGA
 
Protein sequence
MTTKIAFIGL GVMGFPMAGH LAKAGYEVTV YNRTQSKAQE WLARFDGLSQ STPAKAAKDA 
DIIFICVGND DDLRSVVCGE TGILATAKEG AIIVDHTTAS ADVAREIATL SAHQGVAFLD
APVSGGQAGA ENGQLTIMLG GDESSFTQVE PIIASYAKFS RLLGSIGSGQ LAKMMNQICI
AGVVQGLAEA LHFGQNAGLD CESVIDVISQ GAAQSWQMDN RSKTMLAGEY DFGFAVDWMR
KDLGIALDES RKNGSTLPLT ALVDQFYADV QRQGGSRFDT SSLLTRLKSH