| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2164 |
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| Symbol | |
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| ID | 4173419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2612143 |
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| End bp | 2613903 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638055172 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_661736 |
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| Protein GI | 109898481 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.659302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGTA CTTATGACCA ATTAGCCGAG TTAGTCGAAC ATCATTTGGC TGTTATTTAC
AATGAGGTTG AGCTGAGTGT TACCTATCAA ACATTCGCCC AAGATCTGTT GACTACGATG
GGGTTTGAAA AGGACGTATC AATCGCACCT CCTTTACGCC ACCACAATAA TTGGACGCAA
GAAGATGCCG TGCTGATCAC TTATGGCGAT TCAATTGAAT CGCCTGGGGA GAAGCCATTA
ACGACCCTTT ACACCTTTTT AAATGAATGC TGTGCGAAGA ACTTGAACAG CGTGCATATA
TTACCGTTTT TTCCTTACAG TTCAGATGAT GGCTTTTCTG TGATCGACTA TTCTAGTGTG
AACGAAGCAT TAGGCGATTG GGAAGACATC AAACGGATCG CGACAGACTT TAGGTTAATG
TCAGATGTGG TAATTAACCA TTGTTCTTCG CGAAGCGCTT GGTTTGATAA CTTCATTAAG
GGCGAAGGAC CAGGCAGCGA CTTCTTCTAC ACGGCAAGTC CAGATGAAGA CTTATCAAAT
GTGGTCAGGC CTCGTACGTC TCCTCTATTA CGTGAGACTG AAACAGCAAA AGGTATCGAG
CATGTTTGGT GCACATTCAG TCACGATCAA GTTGATTTTG ATTTTCGTAA TCCCAAAGTG
TTAGAAACTT TCGTTTCAAT CATTCGTCAA TATTTGGATA ATGGCGTCAG GCTGTTCAGG
CTGGATGCCG TGGCTTTTTT ATGGAAAAAA CTTGGCACAC CTTGTATCAA CTTAGAACAA
ACCCATGAAG TGGTAAGATT ACTGCGCACA CTTATTGAAC ATGCGCAGCC AGATGTGATT
ATTATCACAG AAACGAATAT ACCAAATAGA GAAAACTTAG CTTACCTTGG AAATGCCAAT
GAAGCTCATG CGATCTACAA TTTCTCTTTG CCCCCATTGT TGGTAAATAC TCTCATTACG
GGTGATTGTC ATTACCTGAA GTCATGGTTA ATGAGCATGC CCCCAGCGCA AAACGGCACT
ACCTATTTTA ATTTTATTGC ATCCCATGAT GGAATCGGCC TACGACCAGC TGAAGGCTTA
TTAGAAGACG AGGAGCTCAC GGTACTCGTA AACACTATGC AGAATTTTGG CGGCAGAATT
TCGTGGCGTG CTTCTGAAAA TGGGCAGCAA AAAGCGTATG AAATTAATAT TGCATTATAT
GACGCTCTTC AGGGGACAAC GAAGGGAACG GATAAATGGG GCTTCCAGCG TTTTATGTGC
GCCCATGCGA TTATGCTTGG TTTAGAAGGG ATCCCTGGGA TCTATATTCA CAGTTTATTG
GCTACAGGTA ATGATTACGA ACGGGTTAAA AATACCAGTC ATAACCGCGC TATAAATCGT
CACAAATGGC AATATACTGA ATTACAGAAG CAATTAGCAT CGCCCTACTC CCAACACCAA
CGCGTATTGA AGGCCATGGG TGAGCTACTC ACCATACGCC GCCAGCAGGT GGCATTTCAC
CCCAACGCTA CACAATTTAC CTTGCAGTTA GGAAGCAAAG TATTTGGTTT CTGGCGTCAG
AGTATCGATA GAAGACAAAG CATATTTTGT ATCAGTAATA TTTGTGATGA GATACAAGAA
ATACACTTAA GTGATATTAA CTTAGTAGGC ACCGACGAGT GGATAGACTT AATGACGCAG
CAACCCATTT ATGCTGCAGA CAGTTTCATT GAACTAGCAC CATATCAAAC GATGTGGATC
AGCAATTTAC CTAAACGTTA A
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| Protein sequence | MQSTYDQLAE LVEHHLAVIY NEVELSVTYQ TFAQDLLTTM GFEKDVSIAP PLRHHNNWTQ
EDAVLITYGD SIESPGEKPL TTLYTFLNEC CAKNLNSVHI LPFFPYSSDD GFSVIDYSSV
NEALGDWEDI KRIATDFRLM SDVVINHCSS RSAWFDNFIK GEGPGSDFFY TASPDEDLSN
VVRPRTSPLL RETETAKGIE HVWCTFSHDQ VDFDFRNPKV LETFVSIIRQ YLDNGVRLFR
LDAVAFLWKK LGTPCINLEQ THEVVRLLRT LIEHAQPDVI IITETNIPNR ENLAYLGNAN
EAHAIYNFSL PPLLVNTLIT GDCHYLKSWL MSMPPAQNGT TYFNFIASHD GIGLRPAEGL
LEDEELTVLV NTMQNFGGRI SWRASENGQQ KAYEINIALY DALQGTTKGT DKWGFQRFMC
AHAIMLGLEG IPGIYIHSLL ATGNDYERVK NTSHNRAINR HKWQYTELQK QLASPYSQHQ
RVLKAMGELL TIRRQQVAFH PNATQFTLQL GSKVFGFWRQ SIDRRQSIFC ISNICDEIQE
IHLSDINLVG TDEWIDLMTQ QPIYAADSFI ELAPYQTMWI SNLPKR
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