| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2133 |
|---|
| Symbol | |
|---|
| ID | 4173388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2579054 |
|---|
| End bp | 2580010 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055141 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_661705 |
|---|
| Protein GI | 109898450 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAG ATACTACATT TCAGAAAGTC CAGTTTATCG ATATCGAGCC CGACCTAGAG
GGTCAGCGCA TCGATAATTT TTTACGTACC TTACTCAAAG GGGTACCTAA GAGCCTTATT
TATCGCATCG TGCGTAAGGG CGAAATTAGG GTTAATAAAA AGCGCGTTAA GCCTGAATAT
AAGCTTCAAG CCCATGACCA GTTACGCATT CCGCCCATAC GTGTGTCTGA GCCCAATGAG
GCGCCTTCCA CTAAATTGGA CAAAGTGGCT TCACTTGAGT CTCATATTTT GTTCGAAGAT
GATTTACTTA TCGTGTTAAA TAAGCCATCA GGAATGGCAG TGCATGGAGG CAGTGGTTTG
AGCTTCGGGG TGATTGAAGC GCTTCGTGCA TTGCGCCCTC AAGCGCGATT CTTAGAATTA
GTTCATCGTT TAGACCGAGA CACATCAGGT TGTTTAGTTA TCGCTAAGAA ACGCTCAGCA
CTTAAAAACT TGCATGAGCA ACTTCGTGAT AAAAAAATGG ATAAGCGCTA TCAAGCATTA
GTAGTAGGTG AATGGCCCGA AAATCGTTAT AAAGTCAATG CACCATTGTT AAAAAACATT
CTTAAATCGG GTGAACGTTT AGTGTCGGTG GATACTGAAG GTAAACCGTC TGAAACACGT
TTTCGTGTAC TCGATAGATT TTCAGGCGCC ACGCTAGTTG AAGCCTCACC TATTACAGGC
CGTACCCACC AAATACGTGT ACATTGCTTG CATGCAGGTC ATCCCATTGC TTGCGATGAC
AAATATGGTG ATTCAGAGTT TACTGGGCTG ATGAATCAAA AAGGGTTGAA GCGTTTATTC
TTGCATGCGT ACTCCTTAGC GTTTATTCAC CCAAAGACTG AAGACAGAGT CAGTTTTCAA
GCCCCACTCG ATAAGCAATT AAACAGAGCG TTAAGCGTGT TGGAAATTCG TAGTTAA
|
|---|
| Protein sequence | MITDTTFQKV QFIDIEPDLE GQRIDNFLRT LLKGVPKSLI YRIVRKGEIR VNKKRVKPEY
KLQAHDQLRI PPIRVSEPNE APSTKLDKVA SLESHILFED DLLIVLNKPS GMAVHGGSGL
SFGVIEALRA LRPQARFLEL VHRLDRDTSG CLVIAKKRSA LKNLHEQLRD KKMDKRYQAL
VVGEWPENRY KVNAPLLKNI LKSGERLVSV DTEGKPSETR FRVLDRFSGA TLVEASPITG
RTHQIRVHCL HAGHPIACDD KYGDSEFTGL MNQKGLKRLF LHAYSLAFIH PKTEDRVSFQ
APLDKQLNRA LSVLEIRS
|
|---|
| |