Gene Patl_2130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2130 
Symbol 
ID4173385 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2576439 
End bp2576987 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content44% 
IMG OID638055138 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_661702 
Protein GI109898447 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAATCA CCCCAACACC ACTCAATGAC GTTCTCATAT TCGAGCCAAA AGTATTTGGC 
GATGAGCGAG GTTTCTTTAT GGAGACCTTC CGCGCGGACT TATTTACCGA AGCAACAGGT 
GTGAAAGCAC TGGTACAAGA TAACCACAGT AAATCCCGCC AAGGTATATT ACGCGGCTTA 
CATTATCAGT TAGAGCACAC CCAAGGTAAG TTAGTACGGG TTACCCAAGG CAGTGTATAT 
GATGTGGTCG TAGATTTACG CCAATCTTCT TCCTCCTTTG GTCAATCATA TGGCATCGAA 
TTGTCAGCGC AGAATAATAA ACAACTGTGG GTCCCAGCGG GTTTTGCCCA TGGTTTTTAC 
GTCACCAGCG AAACAGCTGA GTTTGTATAC AAATGCAGTG ATTATTATCA CCCACAATCT 
GAAGTGTCTA TTTTATGGAA TGATCCTGCC CTTAGCATCC AGTGGCCATT AGTGAACGGA 
GAAACGCCAG CATTATCGGA AAAAGATAAA GTGGGTTGTT TATTCAGCGA TGCCCCAAAA 
TTTGCTTAA
 
Protein sequence
MQITPTPLND VLIFEPKVFG DERGFFMETF RADLFTEATG VKALVQDNHS KSRQGILRGL 
HYQLEHTQGK LVRVTQGSVY DVVVDLRQSS SSFGQSYGIE LSAQNNKQLW VPAGFAHGFY 
VTSETAEFVY KCSDYYHPQS EVSILWNDPA LSIQWPLVNG ETPALSEKDK VGCLFSDAPK 
FA