Gene Patl_2119 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2119 
Symbol 
ID4173374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2567618 
End bp2568433 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content44% 
IMG OID638055127 
Productaminotransferase, class IV 
Protein accessionYP_661691 
Protein GI109898436 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR03461] aminodeoxychorismate lyase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00194364 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGTAA ATGGTTCATC CGCGACACAA CTCGCTATCA CAGATAGAGC GACCCAATAT 
GGCGATGGGT GCTTCACCAC CATGTTAGTT AGAGACGGAA AGGTCGAGTA CTGGGATGCG
CACCTAACAC GGTTACAATC AACCTGTGAA CGTTTGTTAA TTTCTTCGAT AAATTGGGAT
GAGTTAGCGC TACATGTCTC AGCTCTGGCA GAACAAAAAA CGCTTGGTGT GTTGAAAGTG
TTAATTTCAC GAGGCTCCGG TGGACGTGGT TATAGCCCTG AGGGGGCGAA AACCCCTGTT
TACATCGTTA GTCAACATCC ATTTCCTGCT CACTACCAAG ACTGGCAGCG AAAGGGTATC
GAACTCAATG TCAGCAGTAT TACGTTGGCC AAGCAGCCAT TGCTTGCGGG TTTGAAACAT
TTGAACCGCT TAGAGCAAGT ATTGATAAAG CATGAATTAG CTAATGATGC CTTTCATGAT
TGCTTGGTTC TCGATACTGA TGATGTGATT GTTGAAACCT CGGTGGGAAA CATATTTTGG
TATTGCGAAA ATGCTTGGCA TACACCTTCG CTTAATTTTA GTGGTGTCGA AGGCGTTATG
CGTAACCAAG TGATGGCATA CTTATTGGCT AATCAAGTAC CCATCCATCA GTGTAGAGAA
GGACTCAATA GCATACAATC TGCCTCAGAG GTTTTCGTGT GCAATAGCCT GATGGGCATT
GTCCCGGTAT CAGCAATTGA GTTTAGTGAT GGTCACAGGG CATATTATTT AAATGAGAAA
ACACGCGATT TACAAAACGG AGTAATGAAT TATTAG
 
Protein sequence
MIVNGSSATQ LAITDRATQY GDGCFTTMLV RDGKVEYWDA HLTRLQSTCE RLLISSINWD 
ELALHVSALA EQKTLGVLKV LISRGSGGRG YSPEGAKTPV YIVSQHPFPA HYQDWQRKGI
ELNVSSITLA KQPLLAGLKH LNRLEQVLIK HELANDAFHD CLVLDTDDVI VETSVGNIFW
YCENAWHTPS LNFSGVEGVM RNQVMAYLLA NQVPIHQCRE GLNSIQSASE VFVCNSLMGI
VPVSAIEFSD GHRAYYLNEK TRDLQNGVMN Y