| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2100 |
|---|
| Symbol | |
|---|
| ID | 4173779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2543993 |
|---|
| End bp | 2544955 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638055108 |
|---|
| Product | heat shock protein DnaJ-like |
|---|
| Protein accession | YP_661672 |
|---|
| Protein GI | 109898417 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTA AAGATTACTA TGCCATCCTT GGTGTTGCCA AAGACGCCGA GCTTAAAGAG
ATTAAAAAAG CGTACCGTAA ACTTGCGCTC GAATTCCATC CTGATATGAA TGCCGCAGAC
GATGCCGAAG AAAAGTTTAA AGAAGTTGCT GAAGCATACG AAGTCCTCAA AGATACTGAA
AAACGCGCAG AATATGATGA GCTTCGCAAA TATGGCGCGG GACAAAAGCA AGGCTTTACG
CCTCCGCCAG GTTGGCAAAG TGGATCACAA AACACCCATT GGGATGGCAA TAGTGAGGAC
TTTTCAGATT TTTTTAATTC TGTATTTTCA GCTCGTCGTT CTCGCCAGCA GCCTCACAAT
GACCCATTTA GTCAAGGGTA CACTCGGGCT GATTATCCAA TGACGGGGCA AGATGCTGAG
CTTGAAGTGC CTATATTTTT AGAAGATACC CTGCATTCAT CTGCTAAAAC TGTCGAGTTT
ATGCAATCTG AAGTGATTAA CGCTCAATTG GTCAAGAAAA AGAAAACCCT GAAAGTAAAA
ATACCGCAAG GGGTAGTAGA TGGCCAGCGC ATACGTCTTA AAGGGCAAGG TGGTAAAGGT
AGTCAAGGCG GTGAAAACGG CGATTTGTAT TTACATATTC GTTTGGTCCC CCACCCACTT
TTCGATGTGC AAGGTCATGA CTTAACGATT ACGCTGCCAC TTGCCCCATG GGAAGCAATA
TTGGGTACAG AAATCACTAT TCCAACACTG GACGGCAAAG TCAAAATGAC CGTGCAACCT
AACAGCCAAA CAGGTCAAAA ATTACGAATT AAAGGAAAAG GTTTGAAACG TAAATCCGGC
AACGGCGATC TTTTTGCCGT GCTCAAAATT GTTAATCCGC CTGAACCTGA CGAACGAACG
TTAACCCTAT GGAATGAACT TGCTAAAACA AGTGCTTTCG ATCCCAGAAA AGAATGGAGT
TAA
|
|---|
| Protein sequence | MEFKDYYAIL GVAKDAELKE IKKAYRKLAL EFHPDMNAAD DAEEKFKEVA EAYEVLKDTE
KRAEYDELRK YGAGQKQGFT PPPGWQSGSQ NTHWDGNSED FSDFFNSVFS ARRSRQQPHN
DPFSQGYTRA DYPMTGQDAE LEVPIFLEDT LHSSAKTVEF MQSEVINAQL VKKKKTLKVK
IPQGVVDGQR IRLKGQGGKG SQGGENGDLY LHIRLVPHPL FDVQGHDLTI TLPLAPWEAI
LGTEITIPTL DGKVKMTVQP NSQTGQKLRI KGKGLKRKSG NGDLFAVLKI VNPPEPDERT
LTLWNELAKT SAFDPRKEWS
|
|---|
| |