| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2088 |
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| Symbol | |
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| ID | 4173767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2533182 |
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| End bp | 2534180 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638055096 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_661660 |
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| Protein GI | 109898405 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATTG CTTTTTATAA TACCAAAGCC TACGACCGAG AATATTTTAC GCAAGAAAAC
AAAGAGCATC ATCACGACAT TCGCTATTTT GAACCGCATT TAAATGCTCA GACGGTAAAC
TTGATAACCG ACGAAGTAGC AGTGTGTGCC TTCATTAACG ATTGCCTAAA TGCCGAGGTG
CTTAGCGCGT TAAAAGACAA AGGCATTCAA TTAATAGCTC TTCGCTCTGC GGGCTTTAAC
CACGTTGATT TAGCATCTGC AGAACAGCTG GGTTTAAGCG TGGTTCGCGT ACCTGCATAC
TCACCTTACG CCGTTGCTGA ACATGCTGTC GCCTTACTGA TGACCCTTAA CCGGCGGGTT
CATCGAGCCT ATAACCGCGT CCGAGAAGGT GACTTTTCAC TTAATAATTT AATGGGTTAT
GACATTCATG GCAAAACGGT AGGCGTTATT GGTACAGGCA AAATTGGCCA AATTTTCAGC
AAAATAATGC TTGGCTTTGG CTGTCGTGTT ATCGCCTATG ATGTGCAAAA AAATGACTCA
TGTATCGATG GCGGCGTTGA GTACGTGTCG CTAGAAACAC TGTTTCAACG AAGTGATATT
ATCTCACTGC ACTGCCCCCT TAATGATTCA ACTCATCATT TGATTGATGA AGCAGCATTA
ACAAAAATGA AACCTAACGT AACGATTATC AACACGAGCC GTGGTAAGTT AATTGATACT
AAGGCGGCGA TTAAAGTGCT TAAAGCAGGC AAGATCGGGT TATTAGGATT AGACGTTTAC
GAGGAAGAAG AAGCACTCTT TTTTGAAGAC TTATCAGACA GCGTCATTCA AGATGACGTG
TTTTCGCGCT TGACTACCTT TCCAAATGTA CTCGTGACTT GTCATCAAGC TTTTTTCACC
AAAGAAGCAA TGACAAAAAT CGCACAGGTC ACCTTAGATA ATATCGATCA GTTTGAACAC
AATGGAGCCG TCGTTAATGG CGTTACTAAC CCACAATAA
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| Protein sequence | MKIAFYNTKA YDREYFTQEN KEHHHDIRYF EPHLNAQTVN LITDEVAVCA FINDCLNAEV
LSALKDKGIQ LIALRSAGFN HVDLASAEQL GLSVVRVPAY SPYAVAEHAV ALLMTLNRRV
HRAYNRVREG DFSLNNLMGY DIHGKTVGVI GTGKIGQIFS KIMLGFGCRV IAYDVQKNDS
CIDGGVEYVS LETLFQRSDI ISLHCPLNDS THHLIDEAAL TKMKPNVTII NTSRGKLIDT
KAAIKVLKAG KIGLLGLDVY EEEEALFFED LSDSVIQDDV FSRLTTFPNV LVTCHQAFFT
KEAMTKIAQV TLDNIDQFEH NGAVVNGVTN PQ
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