| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2037 |
|---|
| Symbol | |
|---|
| ID | 4173911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2480969 |
|---|
| End bp | 2481946 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055045 |
|---|
| Product | transketolase, central region |
|---|
| Protein accession | YP_661609 |
|---|
| Protein GI | 109898354 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA TGAACATGTT ACAGGCGATC AATAATGCCT TGATTACGGC CATGTCCGGT
GATGAGAAAG TCATGGTATT TGGTGAGGAC GTAGGTCACT TCGGTGGTGT ATTTAGAGCG
ACCAGTAATT TACAGCACCA ATTTGGTAAA GGTCGCTGTT TTAATACACC GTTAACTGAA
CAGGGGATTA TAGGCTTTGC TAATGGCCTG GCATCGCAAG GCTCTGTGCC GGTGGCTGAA
ATTCAATTCG GTGATTATAT CTTCCCTGCG TTTGATCAAA TTGTGAATGA AACTGCTAAA
TTTCGCTATC GCTCTGGTGG TCAGTTCACC TGTGGCACCC TGACCATTCG TACTCCATAT
GGCGGTGGTA TTGCTGGTGG CTTATATCAC TCACAATCTC CAGAAGCTTT TTTTGCTCAC
ATACCCGGCA TGAAAATCGT TATCCCGCGT AATCCATATC AAGCTAAAGG CTTGCTGTTG
GCGTCTATTC GTGACGATAA CCCTGTTTTG TTCATGGAGC CTAAGCGTTT ATACCGCGCG
TCTGTAGGTG ACGTACCTGA GGACGATTAT GAGCTACCTT TAGGCAAAGC CGAGGTGGTT
AGAAAAGGTG AGCATATTAC CTTACTGGCC TGGGGGGCTC AGGTTGAGGT CATCGAAAAA
GCAGCTGAAA TGGCCGAAAA CGATGGCATT TCGTGTGAAA TTATCGATTT ACGCAGCATT
TTGCCTTGGG ATGCCCAAAC GGTGAGCGAG TCGGTGAGAA AGACCGGGCG ATTACTTATC
AACCATGAAG CACCGCAAAC GGGCGGGTTT GCCAGTGAAA TATCCGCTAC CGTACAAGAG
CGTTGCTTCT TGTATTTAGA GTCACCGATA ACCCGAGTGT GCGGATTAGA CACGCCATAT
CCGCTGGCAC ATGAAAAAGA ATACATGCCG GATCGTCTTA AAACTTACGA AGCCATTAAG
CGCTGCGTGA ATTTTTAA
|
|---|
| Protein sequence | MTKMNMLQAI NNALITAMSG DEKVMVFGED VGHFGGVFRA TSNLQHQFGK GRCFNTPLTE
QGIIGFANGL ASQGSVPVAE IQFGDYIFPA FDQIVNETAK FRYRSGGQFT CGTLTIRTPY
GGGIAGGLYH SQSPEAFFAH IPGMKIVIPR NPYQAKGLLL ASIRDDNPVL FMEPKRLYRA
SVGDVPEDDY ELPLGKAEVV RKGEHITLLA WGAQVEVIEK AAEMAENDGI SCEIIDLRSI
LPWDAQTVSE SVRKTGRLLI NHEAPQTGGF ASEISATVQE RCFLYLESPI TRVCGLDTPY
PLAHEKEYMP DRLKTYEAIK RCVNF
|
|---|
| |