| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1994 |
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| Symbol | |
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| ID | 4172129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2424388 |
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| End bp | 2425734 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055002 |
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| Product | sodium:neurotransmitter symporter |
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| Protein accession | YP_661566 |
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| Protein GI | 109898311 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000364284 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGCAC GCGGAGAATT TTCGTCTCGT ATAGGTTTTG TACTAGCAGC GGCAGGGTCA
GCTGTTGGTT TAGGTAATAT TTGGGGGTTT CCGACTCAAG TTGCCAGTAA CGGCGGTGCA
GCGTTTGTAC TCGTATACAT TTTACTGGCG TTTGTGTTGG CTTATCCGGT CCTGATGGCC
GAGCTTATTA TTGGTCGTGC AACGCGCGCC AATATGGTGG ACGCTCTAGG CAAAATATCA
AACAGCAATA TTGGCCGTGC AACGGGAGTA TGGGGCTTTG TTACGGTTTC TATGATCCTC
GCCTTTTATG CCATTGTTGC CGGTTGGATG ATCAGTTATT TCTTCGAGTC CTTCACGCAA
ATTATTGGCC TAGACGAAGC GTCTCAATGG CTTACTGGCT CATCTACTGC CCGTAGTTTA
ATTTTTTGTG GTTTATTTAT TGCGTTAACC GCTTCTATTG TCGTCGGCGG TGTGAGCGAT
GGTATCGAGC GCTGGTCAGT AAGATTAATG CCCACCTTGA TTTTGATTAT CTTACTGTTA
ATCGGCTATG TAGCCACCTT GGACGGGGCG ATGGATGGCT GGAAGGCCTA TTTAGTGCCA
GATTTTAGTG CCATTTTAAA TGCTGAATTG CTTATTAGTG CCATGGGGCA AGCATTCTTT
TCTATGTCTC TGGGTGTGGG CACCATGCTA GTTTACGGCT CTTATGTGAG TAAAAATGAA
AACTTACCTG TGCTTGGTGC ATCGGTCGCG TTAGTCGATA TTGGTGTTGC TATTTTGGCT
GGCATGTTGA TTATTCCTGC AATGTACGTA GCCCTAAATA ATGGCGTACA AATATTTTCT
GAAAATGGCG AGCTTATCGC CGGTGATAGT CTTATTTTCA CCGTGTTGCC AGCACTCTTT
AATACGATGG GCGTGGTAGG TTACTTTGTC GCTTTCGCTT TTTTTGCATT AATGGTCATA
GCTGCATTAA CGTCGTCCAT TTCGATGCTC GAAGTGCCCG TTGCATATGT CGTTGAAAGT
AAAGGACTCG CCCGTAAAAA AGCGGTTTGG CTGCTTGGCA CCATTATTTT CATTATGAGC
AGTACAATTA TTTTCAATTT TGGTGCGCTA TTTGGGCTGG TGATATCTGT TACCACTGAG
TATAGCCAGC CACTGCTTGG ATTAGCGCTG AGTATTTTTG TCGGCTGGGT ATGGAAGCGA
GATCAGATCC TAGCCGAAAT AAAGCATGGT AATGAACAAG CTGAGCATAG CTTTTTCTGG
AAAATTTGGC CTTGGTATCT GAAGTTTGTG TGTCCGGTTA TCATCCTTTT TATGTTCATC
CGTTCACTTA ATATTTTGGA TTTCTAA
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| Protein sequence | MSARGEFSSR IGFVLAAAGS AVGLGNIWGF PTQVASNGGA AFVLVYILLA FVLAYPVLMA
ELIIGRATRA NMVDALGKIS NSNIGRATGV WGFVTVSMIL AFYAIVAGWM ISYFFESFTQ
IIGLDEASQW LTGSSTARSL IFCGLFIALT ASIVVGGVSD GIERWSVRLM PTLILIILLL
IGYVATLDGA MDGWKAYLVP DFSAILNAEL LISAMGQAFF SMSLGVGTML VYGSYVSKNE
NLPVLGASVA LVDIGVAILA GMLIIPAMYV ALNNGVQIFS ENGELIAGDS LIFTVLPALF
NTMGVVGYFV AFAFFALMVI AALTSSISML EVPVAYVVES KGLARKKAVW LLGTIIFIMS
STIIFNFGAL FGLVISVTTE YSQPLLGLAL SIFVGWVWKR DQILAEIKHG NEQAEHSFFW
KIWPWYLKFV CPVIILFMFI RSLNILDF
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