Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1992 |
Symbol | |
ID | 4172127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2421492 |
End bp | 2422142 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638055000 |
Product | putative solute/DNA competence effector |
Protein accession | YP_661564 |
Protein GI | 109898309 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00025199 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATAATC CTCAAAAGTT TTCAAACAGT AAAGAAGTCA TCAATTTTTT AAGTGAGTCG TTTCCTGCAT GCTTTAGTGT GACAGGGGAT GCGAAGCCGC TAAAAATTGG CATTTTCCAA GATTTAGCTC AGCGCCTTGA AGAAGAAGAG CGTGTAAGTA AGACATTGCT TCGCTCCTCT CTTAGACACT ATACAAATAG CTGGCGTTAT TTGCATAGTG TGAAAGAAGG TGCTTTTCGC GTTGACCTTG ACGGTCAGCA GGCTGCTCCT ATTGAAAAAG AGCATGCAGA CCACGCCCAA GCACAGCTTG AAGAAAGCAA AGCGAAAGTA GCAGAAAAGC GCAAAGCGCA GAATGCTGCC AAGCCTGGTG CAAAGAAAAG TTACAAATCC AAGACAGTTC CTGCATTTAA ATCCTCGCCC AAGGGAACTA ATCAGGATAA TGTGAAGCCA AAAGCTAAGT TACCACCCCC AGAGAAGCTA TCAGCTGAGC AATTAGTCGC GGGAACTTCC GTTACCGTAA AAATAGGTAA ATCGCCTATG CCTGCTACAA TTACTGATGT CAGTAAAGAT GGTGTTCAAG TACAGCTTGA TACAGGTATG GTGGTAAAGG TTCAAGTAGA TAACTTGAGG TTGGCCCGTT CTAAGAGGTA G
|
Protein sequence | MDNPQKFSNS KEVINFLSES FPACFSVTGD AKPLKIGIFQ DLAQRLEEEE RVSKTLLRSS LRHYTNSWRY LHSVKEGAFR VDLDGQQAAP IEKEHADHAQ AQLEESKAKV AEKRKAQNAA KPGAKKSYKS KTVPAFKSSP KGTNQDNVKP KAKLPPPEKL SAEQLVAGTS VTVKIGKSPM PATITDVSKD GVQVQLDTGM VVKVQVDNLR LARSKR
|
| |