Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1972 |
Symbol | |
ID | 4172107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2395790 |
End bp | 2396323 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054980 |
Product | prepilin-type cleavage/methylation |
Protein accession | YP_661544 |
Protein GI | 109898289 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTGC CCAACTCGAT AAAGCCAAGT GCGCAAAGTG GATTTACTTT GATTGAGCTA ATCATCGTCA TCGTTATCTT GGGGACATTA GCCGTCACAG CTGCACCAAA GTTTCTCGAT TTAAACGGTG ATGCGAAAAT TGCTGTGCTT GAATCTGTAG GGGGCGCAAT GTTGTCTGCT AGCAAGTTGG TATATGCTAA ATCAGCGATT CGAGGGCAGA ATAGTTTGCA GCTTAGCAAT ATTGATATTG ACGGTGACGG TTCTTCGGAC ATCGAAACAC GATATGGATA CCCAAGTGGC TCTCGAAATA GCGGAATTTC TGCGGCAATG AGCAGCAATT TTGAGAAAGA TTGGATATGG TCAACAGATT ATCGACGGAC TAAATTATAC CTTACTTTTG CGTCGCTCAC CCACACGTCA GGTGCCTATG TAAACCAAGT ACCGATAGTT GCCACCAATT GTTATTTGAT CTATTACCGT GCAGAAAACT TGGGGGAAAC CCCTAGCATA GAATACACGA CTTCAGGTTG TTAA
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Protein sequence | MNLPNSIKPS AQSGFTLIEL IIVIVILGTL AVTAAPKFLD LNGDAKIAVL ESVGGAMLSA SKLVYAKSAI RGQNSLQLSN IDIDGDGSSD IETRYGYPSG SRNSGISAAM SSNFEKDWIW STDYRRTKLY LTFASLTHTS GAYVNQVPIV ATNCYLIYYR AENLGETPSI EYTTSGC
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