Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1932 |
Symbol | |
ID | 4172779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2339611 |
End bp | 2340843 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638054940 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_661504 |
Protein GI | 109898249 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCTGTGC AAAGTGAACA CAAAATGCGC ATTGCCATTG TGGGTGCAGG CATTATGGGG CGAATGATGG CGTGGCAATT ATTACACCGC CAAGCGGATA TTTCGCTCAC CATATTTGAT AAAGATCCCA TCGAAAGTGG CAGTGCTGCT GCGTATACAG CAGCTGGTAT GTTAGCACCG TATAGCGAGC TTGAAAGTGC AGAGCTTGCT GTGTTTTCTA TGGGGATGGC GTCTTTAACG CGCTGGCCGG ATGTTATTAA CAGCCTAAAT TTGCACTTGG CTAAACCACT CACGTTGTTC GTTCAGGGCA CGTTAGTGGT GGCGCACCGC GAAGATAAAG CCGATTTTCA GCAGTTTTCC CGCCAGTTAA TGGGTAAGTT GCCAGATTTC GCGCAAGATG AAGAGTTTTC ACATATGCAG TTATTAACCC AAGCAGCGCT TCATCATTAT GCTCCGCAAT TAGCAAAACA CTTTGACGGC GGACTTTATC TCCCGAACGA AGCATGGGTT GATACCGCTG AGGTGATGAC AGGCCTTGCA TCCTACCTTG AGCAATCAGC TGTGACGTGG CAGTCAAACT CGCACGTGCT CAGGGTCGAT AACGAACAGC GAAATAATAA TGGCAATAGC GCAGCGGTAG TCTTGCCTGA GGGAAAACAG GTATTTGATT ATGTGATTGA CTGCCGCGGA CTTGGCGCAA AGCAAGTCCC ACTTGCTGAT ACCCAAAGGC GGACTAAGTT CAACTACAAC GCCACTAAAC AGGAAACGTT CGGGCAGCAA ATACCTGAGT TACGCGGGGT GCGCGGTGAA GTCATTACCC TATATGCGCC AGAGGTAGAG CTTAAGCACG CAGTGCGACT GATGCATCCG AGATACAAGT TGTATATTGC ACCGCGGCAC AACCATCATT TTGTGATTGG TGCGAGTCAA ATCGAAAGCG AAGATACTGG CCCAATCACA GTGCGCTCGA CGCTTGAACT GCTGTCTGCA GCGTATTCCA TTGACGTGGG TTTTGGTGAA GCAAAGATTG TACAAACTGC GACGAATTGT CGCCCAGCAT ACCCAGATAA CCTACCTAAA ATATATTTTA ATCAGCGGGT TATACGCATC AATGGTCTAT TTCGTCACGG TTACTTGTTA GCGCCCATAC TCGCTGAACA GGCGTGCGAC AGGTTGTTCA ATAGCGATTT CAAATCAACA TTTGAGAACT TAATTCAGGA AGTAGCATGT TAA
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Protein sequence | MAVQSEHKMR IAIVGAGIMG RMMAWQLLHR QADISLTIFD KDPIESGSAA AYTAAGMLAP YSELESAELA VFSMGMASLT RWPDVINSLN LHLAKPLTLF VQGTLVVAHR EDKADFQQFS RQLMGKLPDF AQDEEFSHMQ LLTQAALHHY APQLAKHFDG GLYLPNEAWV DTAEVMTGLA SYLEQSAVTW QSNSHVLRVD NEQRNNNGNS AAVVLPEGKQ VFDYVIDCRG LGAKQVPLAD TQRRTKFNYN ATKQETFGQQ IPELRGVRGE VITLYAPEVE LKHAVRLMHP RYKLYIAPRH NHHFVIGASQ IESEDTGPIT VRSTLELLSA AYSIDVGFGE AKIVQTATNC RPAYPDNLPK IYFNQRVIRI NGLFRHGYLL APILAEQACD RLFNSDFKST FENLIQEVAC
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