Gene Patl_1887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1887 
Symbol 
ID4172732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2282531 
End bp2283025 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content45% 
IMG OID638054896 
Productpeptidylprolyl isomerase 
Protein accessionYP_661461 
Protein GI109898206 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.033012 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCACAA TTCATACTAA CTACGGCGTC ATTAACGTAG AGCTTTTCGC AGACAAAGCG 
CCTGAGACAG TTGCTAACTT TTTGAGTTAT GCCAAAGAAG GGTTTTACGA CAACACAATC
TTTCACCGTG TTATCGATGG TTTCATGGTA CAAGGCGGTG GCTTCGAGCC CGGCATGGAG
CAAAAAGCAA CTAAAGCGAC CATTAAAAAT GAAGCTAACA ATGGCCTTGC CAACGAAGTA
GGCACATTGG CTATGGCACG TACAAATGAG CCGCATTCTG CTAGCTCACA GTTTTTCATC
AACGTGGCTA ACAACAGCTT CTTGAACTTC CGCAGCGAAT CTGGCGATGG CTGGGGTTAC
TGCGTATTTG CTAAAGTGAC TGACGGCATG GACGTGGTCA ACAAGATCAA AGACGTTAAA
ACGGGCAACT CTGGTTATCA CCAAGATGTG CCTGTAGAAG ATGTGGTTAT TCAGAAAGTT
GAAGTTAGCG AATAA
 
Protein sequence
MVTIHTNYGV INVELFADKA PETVANFLSY AKEGFYDNTI FHRVIDGFMV QGGGFEPGME 
QKATKATIKN EANNGLANEV GTLAMARTNE PHSASSQFFI NVANNSFLNF RSESGDGWGY
CVFAKVTDGM DVVNKIKDVK TGNSGYHQDV PVEDVVIQKV EVSE