Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1878 |
Symbol | |
ID | 4173063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2272764 |
End bp | 2273681 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054887 |
Product | LysR family transcriptional regulator |
Protein accession | YP_661452 |
Protein GI | 109898197 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTAA ATAGAATAGA TCTTAATCTT TTTGCCGTAT TCGATGCGAT ATATACCGCC GGTAGTTTGA CTAAAGCGGC AGACGTATTG TGTATCACAC AACCGGCGGT CAGTAACTCA CTCGCACGCC TACGAGAAAT GTTGAACGAC CCGCTGTTTG TGCGCACAGG CCACAGCATG ACGCCGACTC CAGCGGCGCA GAATATCATC GGTCCCGCTC GCGAAGCACT GGGCTTATTG CGTAAAAGTG TGCAGGAAAG TCATACATTC GATCCCGCTA CAGCAGAAAT AAGCTACAAC TTCGCTGCCA GAGACTTACT CGAAGCGAGT ATTATGCCGA GGCTCACCGC TCAGCTGCAG AACGTAGCGC CAAACATAAC GCTCACCAAT TACGATATTT CGCGCAGCAA TATTGTGTCT GCGATGGCAA GTGGTAGTTT AGATTTTTAC GCGGATGCCT CCTCGGCATT TGTTGATCCA CATTTGTGTA AACAGAAAAT TGCAGAAGAT AGGTTTGTTG TCATCGCGCG GCGCAATCAC CCAGCACTAA GCCAAGGGTT AAATTTAGAC ACTTTCTTAC AGCTTGGGCA CATCAATATT TCTCAGCGCC GCACGGGTGC GGGTCCAATT GATGTTGCAC TGGATAAACT CAATTTAAAA CGGCGTGTGG TGATGCGTGG CCAACACTTT TTGACCGTGC CTGCGGTGAT TGTAAAGACC GATTTAATCG CATGTGTGCC ATATCATCTT GCTAAGCATT ATGATTGCTC AATATACGAA TTACCTTTTG AATTGGCTCC AGTAGAATAC TTTTTGTACT GGCATGTGAG TGCGGATCAT GATCACGCGC ATATGTGGCT TCGCGAACAA ATCGCTGAAG TTGTCACGAC GTTTCATCCC AGTGTGTCAG TCTCATAA
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Protein sequence | MNLNRIDLNL FAVFDAIYTA GSLTKAADVL CITQPAVSNS LARLREMLND PLFVRTGHSM TPTPAAQNII GPAREALGLL RKSVQESHTF DPATAEISYN FAARDLLEAS IMPRLTAQLQ NVAPNITLTN YDISRSNIVS AMASGSLDFY ADASSAFVDP HLCKQKIAED RFVVIARRNH PALSQGLNLD TFLQLGHINI SQRRTGAGPI DVALDKLNLK RRVVMRGQHF LTVPAVIVKT DLIACVPYHL AKHYDCSIYE LPFELAPVEY FLYWHVSADH DHAHMWLREQ IAEVVTTFHP SVSVS
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