Gene Patl_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1878 
Symbol 
ID4173063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2272764 
End bp2273681 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content47% 
IMG OID638054887 
ProductLysR family transcriptional regulator 
Protein accessionYP_661452 
Protein GI109898197 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAA ATAGAATAGA TCTTAATCTT TTTGCCGTAT TCGATGCGAT ATATACCGCC 
GGTAGTTTGA CTAAAGCGGC AGACGTATTG TGTATCACAC AACCGGCGGT CAGTAACTCA
CTCGCACGCC TACGAGAAAT GTTGAACGAC CCGCTGTTTG TGCGCACAGG CCACAGCATG
ACGCCGACTC CAGCGGCGCA GAATATCATC GGTCCCGCTC GCGAAGCACT GGGCTTATTG
CGTAAAAGTG TGCAGGAAAG TCATACATTC GATCCCGCTA CAGCAGAAAT AAGCTACAAC
TTCGCTGCCA GAGACTTACT CGAAGCGAGT ATTATGCCGA GGCTCACCGC TCAGCTGCAG
AACGTAGCGC CAAACATAAC GCTCACCAAT TACGATATTT CGCGCAGCAA TATTGTGTCT
GCGATGGCAA GTGGTAGTTT AGATTTTTAC GCGGATGCCT CCTCGGCATT TGTTGATCCA
CATTTGTGTA AACAGAAAAT TGCAGAAGAT AGGTTTGTTG TCATCGCGCG GCGCAATCAC
CCAGCACTAA GCCAAGGGTT AAATTTAGAC ACTTTCTTAC AGCTTGGGCA CATCAATATT
TCTCAGCGCC GCACGGGTGC GGGTCCAATT GATGTTGCAC TGGATAAACT CAATTTAAAA
CGGCGTGTGG TGATGCGTGG CCAACACTTT TTGACCGTGC CTGCGGTGAT TGTAAAGACC
GATTTAATCG CATGTGTGCC ATATCATCTT GCTAAGCATT ATGATTGCTC AATATACGAA
TTACCTTTTG AATTGGCTCC AGTAGAATAC TTTTTGTACT GGCATGTGAG TGCGGATCAT
GATCACGCGC ATATGTGGCT TCGCGAACAA ATCGCTGAAG TTGTCACGAC GTTTCATCCC
AGTGTGTCAG TCTCATAA
 
Protein sequence
MNLNRIDLNL FAVFDAIYTA GSLTKAADVL CITQPAVSNS LARLREMLND PLFVRTGHSM 
TPTPAAQNII GPAREALGLL RKSVQESHTF DPATAEISYN FAARDLLEAS IMPRLTAQLQ
NVAPNITLTN YDISRSNIVS AMASGSLDFY ADASSAFVDP HLCKQKIAED RFVVIARRNH
PALSQGLNLD TFLQLGHINI SQRRTGAGPI DVALDKLNLK RRVVMRGQHF LTVPAVIVKT
DLIACVPYHL AKHYDCSIYE LPFELAPVEY FLYWHVSADH DHAHMWLREQ IAEVVTTFHP
SVSVS