| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1872 |
|---|
| Symbol | |
|---|
| ID | 4173057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2265518 |
|---|
| End bp | 2266663 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054881 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_661446 |
|---|
| Protein GI | 109898191 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3287] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATA TAAAAACAAT AACAGCCATC ACCCGCTCCA TTGACCCAGC GATTGCCGCC
CAAGAATTAC GTCAACAACT ATCAGCCCCA CATATTACGT TTGTACTTTT CTATTGCTCA
TCTGTGTATT CATTACAGCG CTTAGCATCC AATATGGCGT CCGCTTTTGA CGGCGTTGAT
TTAGTCGGTT GCACCACCGC CGGTGAAATT ACCCCTAATG GCTACGAACA GCACTCCATT
ATCGCCATTG GCTTTAGTGC TTCTCATTTT GCTATTAGCG CGCAAATCGT CGAATCAATG
GAGAACTTCA CGTTAATAGA TGCTCAGGAA ACCATTAACA AGCTAACCGA AAATTGCTAT
GTCAAAAAAC TTACTACGAT CAAAAATCAT TCATTTATAT TGACGTTACT CGATGGTTTA
TCCGCCGACG AGGAGCAATT CTTGGTGACT CTTAATTCTG CGTCAGGCGG CATACCTCAT
TTTGGCGGCT CTGCGGGTGA CGACATACAT TTAGCCACAA CGCATGTGTT CTACCAAGGG
TCCTTCTACC AAAACGCGGC TATCGTATTG ATGGTAAATA CCACATGTGC TTTTGAAGTC
TTCAGTTGTA ATCATATCAA ACACCCCACA AGTAAAGTCG TCGTCACCGC AGCGGATGCT
GACAGTCGTA CTGTGTTTGA GTTAAATGCT GAACCTGCCG CGCTCGAGTA TGCAAGACTA
TTAAATGTCA CCGTAGGTGA GCTTAGCCCA GAGTTATTTG CTCTGTACCC CTTGGCAGTT
AAAGTCGGAG GGCAATACTA TATTCGTTCT ATTCAAAAAG TGAATGAAGC TGACTTGAGC
CTGACCTTCT ACTGCGCCGT AGATGTAGGT ATTGTGCTGA GCACTGTGGT GATGGATGAT
ATTTTCGCAT CCCTTAGCAG CGAGTTGAGC CGCATGACCT CCCAATATGG GGAGCCTGAA
TTAGTATTGA CTTGCGATTG TTTCTTACGC CGCCTCGAAA TCGAGCAGCG CCAGCAACTC
AAGCAAGCTA AGGAATTGCA ACAGCGATAC AACATACGTG GTTTCAACAC CTATGGAGAA
CATATTGATG GCACGCATTT AAATCAAACG TTCACCGGCG TTTTCATTGC CGGGGGTAAC
GAATGA
|
|---|
| Protein sequence | MSNIKTITAI TRSIDPAIAA QELRQQLSAP HITFVLFYCS SVYSLQRLAS NMASAFDGVD
LVGCTTAGEI TPNGYEQHSI IAIGFSASHF AISAQIVESM ENFTLIDAQE TINKLTENCY
VKKLTTIKNH SFILTLLDGL SADEEQFLVT LNSASGGIPH FGGSAGDDIH LATTHVFYQG
SFYQNAAIVL MVNTTCAFEV FSCNHIKHPT SKVVVTAADA DSRTVFELNA EPAALEYARL
LNVTVGELSP ELFALYPLAV KVGGQYYIRS IQKVNEADLS LTFYCAVDVG IVLSTVVMDD
IFASLSSELS RMTSQYGEPE LVLTCDCFLR RLEIEQRQQL KQAKELQQRY NIRGFNTYGE
HIDGTHLNQT FTGVFIAGGN E
|
|---|
| |