| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1870 |
|---|
| Symbol | |
|---|
| ID | 4173055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2262298 |
|---|
| End bp | 2262954 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638054879 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_661444 |
|---|
| Protein GI | 109898189 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAA TTCTAGTTGC TGATGATCAC CCTTTATTTC GTGAAGCGAT AATCAATACG
ATCAGTTCTG CGTTTCCAGG CTCTACTACC TACGAAACAG AAGATATTGA ATCAACGCTT
GAGTTAGTCA AAAGCAATGA CGAAATAGAC CTGATCTTGC TCGATTTGAA CATGCCCGGC
ATGACGGGGC TTAACGGTTT ACTGGATGTT CGTAATGAAT GCCCCACCAC GCCAGTGGTT
ATTGTTTCGG CTGAAACTGA AAAGCAAAAA ATATTGCAGA CCCTTTCTTA TGGTGCTGTT
GGCTTCATTG CTAAGTCTTC CTCAAAGCAG GTGATTGGCG AGGCTATTCA GAGTGTGTTT
GCTGGAAACG TGTATTTACC GCCGAATATT ATGCGCAGTC AGGCTGTTGC TAATCAGACC
AATGAATGTG AAATTTCTCC CGAAAAAATA TCACTCTTGA CTCGCCGTGA ACTCATTGTG
TTAAAACATT TAACCAAAGG TGAGGCCAAT AAACAGATTG CTTATAATCT GCATATTTCA
GAGACAACCA TTAAGTCTCA TGTGTCATCT ATCCTTAAAA AGTTGGGCGC TACAAACCGT
GTGAAAGTGG TGGTGGGTTG CGGCGATATC GACTTTAATC AATATTTAAA ACGCTAA
|
|---|
| Protein sequence | MYKILVADDH PLFREAIINT ISSAFPGSTT YETEDIESTL ELVKSNDEID LILLDLNMPG
MTGLNGLLDV RNECPTTPVV IVSAETEKQK ILQTLSYGAV GFIAKSSSKQ VIGEAIQSVF
AGNVYLPPNI MRSQAVANQT NECEISPEKI SLLTRRELIV LKHLTKGEAN KQIAYNLHIS
ETTIKSHVSS ILKKLGATNR VKVVVGCGDI DFNQYLKR
|
|---|
| |